Gorai.009G223200 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G223200 T228778_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.850 0.825
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.846 0.947
GRMZM2G135447
M02139_2.00 		Zea mays
DTGACRKS
SMYGTCAH		 PBM
Weirauch et al.(2014)
pTH6328 		0.803 0.895
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.764 0.737
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.710 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G223200.1 Homeodomain 274 333

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011942 Aedes aegypti AAEL011942 N
AAEL014948 Aedes aegypti AAEL014948 N
ACOM024314 Anopheles coluzzii ACOM024314 N
ACUA013247 Anopheles culicifacies ACUA013247 N
AFAF007211 Anopheles farauti AFAF007211 N
AGAP006701 Anopheles gambiae AGAP006701 N
AMEC010719 Anopheles melas AMEC010719 N
CPIJ004749 Culex quinquefasciatus CPIJ004749 N
CpipJ_CPIJ004749 Culex pipiens CpipJ_CPIJ004749 N