Lus10021470.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10021470.g T228892_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10021470 Homeodomain 29 88

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HES6 Bos taurus ENSBTAG00000009870 I
ENSCPOG00000023252 Cavia porcellus ENSCPOG00000023252 I
ENSCSAG00000006035 Chlorocebus sabaeus ENSCSAG00000006035 I
ENSDORG00000002308 Dipodomys ordii ENSDORG00000002308 N
HES6 Homo sapiens ENSG00000144485 D
ENSMEUG00000011309 Macropus eugenii ENSMEUG00000011309 I
ENSMMUG00000031113 Macaca mulatta ENSMMUG00000031113 I
ENSMPUG00000000119 Mustela putorius furo ENSMPUG00000000119 I
Hes6 Mus musculus ENSMUSG00000067071 I
HES6 Ochotona princeps ENSOPRG00000014855 I
ENSPPYG00000013323 Pongo abelii ENSPPYG00000013323 I
HES6 Pteropus vampyrus ENSPVAG00000005572 I
Hes6 Rattus norvegicus ENSRNOG00000020194 I
HES6 Sus scrofa ENSSSCG00000016342 I
ENSSTOG00000025930 Ictidomys tridecemlineatus ENSSTOG00000025930 I
HES6 Tursiops truncatus ENSTTRG00000009946 I