MDP0000187050 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000187050 T229004_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.723 0.650
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.719 0.650
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.719 0.650
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.706 0.650
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.695 0.500
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.695 0.500
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.695 0.500
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.695 0.500
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.633 0.475
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.626 0.750
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.606 0.450
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000187050 Homeodomain 254 293

Links

Other Homeodomain family TFs
Other Malus domestica TFs

1242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009291 Calypte anna Aan_R009291 I
Afo_R001565 Aptenodytes forsteri Afo_R001565 I
Brh_R009924 Buceros rhinoceros Brh_R009924 I
ENSAMEG00000015231 Ailuropoda melanoleuca ENSAMEG00000015231 I
ENSAMXG00000012133 Astyanax mexicanus ENSAMXG00000012133 I
NAIF1 Bos taurus ENSBTAG00000012156 I
ENSBTAP00000016123-D1 Bos grunniens ENSBTAP00000016123-D1 I
NAIF1 Canis familiaris ENSCAFG00000020093 I
NAIF1 Callithrix jacchus ENSCJAG00000019895 I
ENSCPOG00000008322 Cavia porcellus ENSCPOG00000008322 I
ENSCSAG00000013989 Chlorocebus sabaeus ENSCSAG00000013989 I
naif1 Danio rerio ENSDARG00000062753 I
NAIF1 Dasypus novemcinctus ENSDNOG00000034148 I
NAIF1 Equus caballus ENSECAG00000014827 I
NAIF1 Erinaceus europaeus ENSEEUG00000009746 I
ENSFALG00000001298 Ficedula albicollis ENSFALG00000001298 I
NAIF1 Felis catus ENSFCAG00000001494 I
NAIF1 Homo sapiens ENSG00000171169 I
naif1 Gasterosteus aculeatus ENSGACG00000018458 I
NAIF1 Gallus gallus ENSGALG00000027734 I
NAIF1 Gorilla gorilla ENSGGOG00000011178 I
ENSLACG00000016334 Latimeria chalumnae ENSLACG00000016334 I
NAIF1 Loxodonta africana ENSLAFG00000031104 I
ENSMEUG00000000224 Macropus eugenii ENSMEUG00000000224 I
NAIF1 Meleagris gallopavo ENSMGAG00000003576 I
ENSMICG00000012773 Microcebus murinus ENSMICG00000012773 I
NAIF1 Myotis lucifugus ENSMLUG00000013565 I
NAIF1 Macaca mulatta ENSMMUG00000004685 I
NAIF1 Monodelphis domestica ENSMODG00000005695 I
ENSMPUG00000013510 Mustela putorius furo ENSMPUG00000013510 I
Naif1 Mus musculus ENSMUSG00000039164 I
ENSNLEG00000017520 Nomascus leucogenys ENSNLEG00000017520 I
ENSOARG00000010974 Ovis aries ENSOARG00000010974 I
NAIF1 Oryctolagus cuniculus ENSOCUG00000013385 I
NAIF1 Otolemur garnettii ENSOGAG00000031498 I
ENSONIG00000012590 Oreochromis niloticus ENSONIG00000012590 I
ENSOPRG00000016390 Ochotona princeps ENSOPRG00000016390 I
naif1 Oryzias latipes ENSORLG00000018283 I
ENSP00000362170 Macaca fascicularis ENSP00000362170 I
NAIF1 Procavia capensis ENSPCAG00000011530 I
ENSPFOG00000005824 Poecilia formosa ENSPFOG00000005824 I
ENSPPYG00000019640 Pongo abelii ENSPPYG00000019640 I
ENSPSIG00000007027 Pelodiscus sinensis ENSPSIG00000007027 I
NAIF1 Pan troglodytes ENSPTRG00000021409 I
NAIF1 Pteropus vampyrus ENSPVAG00000002431 I
Naif1 Rattus norvegicus ENSRNOG00000050204 I
NAIF1 Sorex araneus ENSSARG00000011449 I
NAIF1 Sus scrofa ENSSSCG00000005630 I
ENSSTOG00000007837 Ictidomys tridecemlineatus ENSSTOG00000007837 I
NAIF1 Taeniopygia guttata ENSTGUG00000003526 I
naif1 Takifugu rubripes ENSTRUG00000013589 I
ENSTSYG00000001421 Tarsius syrichta ENSTSYG00000001421 I
NAIF1 Tursiops truncatus ENSTTRG00000016473 I
ENSXMAG00000013359 Xiphophorus maculatus ENSXMAG00000013359 I
NAIF1_CHICK Gallus gallus NAIF1_CHICK D
Pvit_08550 Pogona vitticeps Pvit_08550 I
naif1 Xenopus tropicalis XB-GENE-986890 D
naif1.S Xenopus laevis XB-GENE-986896 D