orange1.1g003069m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g003069m.g T229133_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.802 0.930
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.802 0.930
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.802 0.930
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.797 0.895
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.797 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g003069m Homeodomain 18 78
orange1.1g003075m Homeodomain 18 78

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27961.m000091 Ricinus communis 27961.m000091 I
29851.m002359 Ricinus communis 29851.m002359 I
30078.m002348 Ricinus communis 30078.m002348 I
AMTR_s00003p00252470 Amborella trichopoda AMTR_s00003p00252470 I
AMTR_s00007p00063550 Amborella trichopoda AMTR_s00007p00063550 N
AMTR_s00009p00259320 Amborella trichopoda AMTR_s00009p00259320 I
AMTR_s00119p00040230 Amborella trichopoda AMTR_s00119p00040230 I
NAC018 Arabidopsis thaliana AT1G52880 D
NAC056 Arabidopsis thaliana AT3G15510 I
BGIOSGA025410 Oryza indica BGIOSGA025410 I
BGIOSGA026407 Oryza indica BGIOSGA026407 I
Bo1g128420 Brassica oleracea Bo1g128420 I
Bo6g030920 Brassica oleracea Bo6g030920 I
Bostr.0124s0081 Boechera stricta Bostr.0124s0081 I
Bostr.28625s0148 Boechera stricta Bostr.28625s0148 I
Bra018997 Brassica rapa Bra018997 I
Bra021114 Brassica rapa Bra021114 I
Bra027237 Brassica rapa Bra027237 I
BRADI1G24390 Brachypodium distachyon BRADI1G24390 I
BRADI1G53770 Brachypodium distachyon BRADI1G53770 I
BRADI1G63600 Brachypodium distachyon BRADI1G63600 I
BRADI2G24987 Brachypodium distachyon BRADI2G24987 I
BRADI2G53260 Brachypodium distachyon BRADI2G53260 I
Cagra.0946s0024 Capsella grandiflora Cagra.0946s0024 I
Carubv10009524m.g Capsella rubella Carubv10009524m.g I
Carubv10014008m.g Capsella rubella Carubv10014008m.g I
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I
cassava42314.valid.m1 Manihot esculenta cassava42314.valid.m1 I
cassava5169.m1 Manihot esculenta cassava5169.m1 I
Ca_06901 Cicer arietinum Ca_06901 I
Ca_19654 Cicer arietinum Ca_19654 I
Ciclev10008628m.g Citrus clementina Ciclev10008628m.g I
Ciclev10015688m.g Citrus clementina Ciclev10015688m.g I
Cla011948 Citrullus lanatus Cla011948 I
Cla014135 Citrullus lanatus Cla014135 I
Cucsa.060600 Cucumis sativus Cucsa.060600 I
Cucsa.074600 Cucumis sativus Cucsa.074600 I
Eucgr.B02485 Eucalyptus grandis Eucgr.B02485 I
Eucgr.F01091 Eucalyptus grandis Eucgr.F01091 I
evm.TU.supercontig_27.81 Carica papaya evm.TU.supercontig_27.81 I
evm.TU.supercontig_80.94 Carica papaya evm.TU.supercontig_80.94 I
e_gw1.259.28.1 Physcomitrella patens e_gw1.259.28.1 I
F775_02308 Aegilops tauschii F775_02308 I
F775_02328 Aegilops tauschii F775_02328 I
F775_04075 Aegilops tauschii F775_04075 N
F775_14365 Aegilops tauschii F775_14365 I
F775_16000 Aegilops tauschii F775_16000 I
NAM Arabidopsis lyrata fgenesh2_kg.1__4366__AT1G52880.1 I
ATNAC2 Arabidopsis lyrata fgenesh2_kg.3__1698__AT3G15510.1 I
gene30439-v1.0-hybrid Fragaria vesca gene30439-v1.0-hybrid I
gene31150-v1.0-hybrid Fragaria vesca gene31150-v1.0-hybrid I
GLYMA07G31220 Glycine max GLYMA07G31220 I
GLYMA13G35560 Glycine max GLYMA13G35560 I
Gorai.002G073800 Gossypium raimondii Gorai.002G073800 I
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I
Gorai.009G170700 Gossypium raimondii Gorai.009G170700 I
Gorai.009G433100 Gossypium raimondii Gorai.009G433100 I
Gorai.013G167100 Gossypium raimondii Gorai.013G167100 I
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I
GRMZM2G011598 Zea mays GRMZM2G011598 I
GRMZM2G042494 Zea mays GRMZM2G042494 I
GRMZM2G109627 Zea mays GRMZM2G109627 I
GRMZM2G430849 Zea mays GRMZM2G430849 I
GRMZM2G479980 Zea mays GRMZM2G479980 N
GSMUA_Achr3G18010_001 Musa acuminata GSMUA_Achr3G18010_001 I
GSMUA_Achr4G02380_001 Musa acuminata GSMUA_Achr4G02380_001 I
GSMUA_Achr5G07590_001 Musa acuminata GSMUA_Achr5G07590_001 I
GSMUA_Achr6G17720_001 Musa acuminata GSMUA_Achr6G17720_001 I
GSMUA_Achr6G32320_001 Musa acuminata GSMUA_Achr6G32320_001 I
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I
GSMUA_AchrUn_randomG17360_001 Musa acuminata GSMUA_AchrUn_randomG17360_001 I
LjSGA_023894.2 Lotus japonicus LjSGA_023894.2 I
LPERR01G00250 Leersia perrieri LPERR01G00250 I
LPERR03G13950 Leersia perrieri LPERR03G13950 I
LPERR07G23420 Leersia perrieri LPERR07G23420 N
Lus10006547.g Linum usitatissimum Lus10006547.g I
Lus10011215.g Linum usitatissimum Lus10011215.g I
Lus10015076.g Linum usitatissimum Lus10015076.g N
Lus10018469.g Linum usitatissimum Lus10018469.g I
Lus10023179.g Linum usitatissimum Lus10023179.g N
Lus10032657.g Linum usitatissimum Lus10032657.g I
Lus10043095.g Linum usitatissimum Lus10043095.g I
MDP0000674514 Malus domestica MDP0000674514 I
MDP0000868419 Malus domestica MDP0000868419 I
mgf007362m Mimulus guttatus mgf007362m I
mgf016382m Mimulus guttatus mgf016382m I
mgf025001m Mimulus guttatus mgf025001m I
MLOC_65101 Hordeum vulgare MLOC_65101 I
MLOC_8116 Hordeum vulgare MLOC_8116 I
MTR_2157s0010 Medicago truncatula MTR_2157s0010 I
MTR_2g080010 Medicago truncatula MTR_2g080010 I
MTR_4g089135 Medicago truncatula MTR_4g089135 I
OB03G25680 Oryza brachyantha OB03G25680 I
OB05G24480 Oryza brachyantha OB05G24480 I
OB07G15670 Oryza brachyantha OB07G15670 I
OB07G32110 Oryza brachyantha OB07G32110 I
OB11G11210 Oryza brachyantha OB11G11210 I
OB12G11500 Oryza brachyantha OB12G11500 I
OBART03G15960 Oryza barthii OBART03G15960 I
OBART07G07600 Oryza barthii OBART07G07600 I
OBART07G26600 Oryza barthii OBART07G26600 I
OGLUM03G16100 Oryza glumaepatula OGLUM03G16100 I
OGLUM07G07280 Oryza glumaepatula OGLUM07G07280 I
OGLUM07G26630 Oryza glumaepatula OGLUM07G26630 I
OGLUM07G26640 Oryza glumaepatula OGLUM07G26640 I
OLONG_005610 Oryza longistaminata OLONG_005610 I
OLONG_012944 Oryza longistaminata OLONG_012944 I
OMERI03G14270 Oryza meridionalis OMERI03G14270 I
OMERI07G06210 Oryza meridionalis OMERI07G06210 I
OMERI07G23240 Oryza meridionalis OMERI07G23240 I
OMERI12G00480 Oryza meridionalis OMERI12G00480 I
ONIVA03G16920 Oryza nivara ONIVA03G16920 I
ONIVA07G06360 Oryza nivara ONIVA07G06360 I
ONIVA07G26310 Oryza nivara ONIVA07G26310 I
OPUNC03G15460 Oryza punctata OPUNC03G15460 I
OPUNC07G07310 Oryza punctata OPUNC07G07310 I
OPUNC07G25060 Oryza punctata OPUNC07G25060 I
orange1.1g016791m.g Citrus sinensis orange1.1g016791m.g I
orange1.1g017854m.g Citrus sinensis orange1.1g017854m.g I
ORGLA03G0152700 Oryza glaberrima ORGLA03G0152700 I
ORGLA07G0064400 Oryza glaberrima ORGLA07G0064400 I
ORGLA07G0209600 Oryza glaberrima ORGLA07G0209600 I
ORUFI03G16510 Oryza rufipogon ORUFI03G16510 I
ORUFI07G07590 Oryza rufipogon ORUFI07G07590 I
ORUFI07G27590 Oryza rufipogon ORUFI07G27590 I
OS03G0327800 Oryza sativa OS03G0327800 I
NAC67 Oryza sativa OS07G0225300 I
Pavir.Ba00642 Panicum virgatum Pavir.Ba00642 I
Pavir.Bb03737 Panicum virgatum Pavir.Bb03737 I
Pavir.Ea00837 Panicum virgatum Pavir.Ea00837 I
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I
Pavir.J08552 Panicum virgatum Pavir.J08552 I
Pavir.J22666 Panicum virgatum Pavir.J22666 I
Pavir.J23256 Panicum virgatum Pavir.J23256 I
PGSC0003DMG400017567 Solanum tuberosum PGSC0003DMG400017567 I
PGSC0003DMG400025031 Solanum tuberosum PGSC0003DMG400025031 I
Pm009955 Prunus mume Pm009955 I
POPTR_0004s03820 Populus trichocarpa POPTR_0004s03820 I
PRUPE_ppa007314mg Prunus persica PRUPE_ppa007314mg I
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I
Sb01g036560 Sorghum bicolor Sb01g036560 I
Sb02g002620 Sorghum bicolor Sb02g002620 N
Sb02g043210 Sorghum bicolor Sb02g043210 I
SELMODRAFT_105213 Selaginella moellendorffii SELMODRAFT_105213 I
SELMODRAFT_108667 Selaginella moellendorffii SELMODRAFT_108667 I
SELMODRAFT_125697 Selaginella moellendorffii SELMODRAFT_125697 I
SELMODRAFT_133982 Selaginella moellendorffii SELMODRAFT_133982 I
SELMODRAFT_147012 Selaginella moellendorffii SELMODRAFT_147012 I
SELMODRAFT_47266 Selaginella moellendorffii SELMODRAFT_47266 I
Si002386m.g Setaria italica Si002386m.g N
Si030267m.g Setaria italica Si030267m.g I
Si036303m.g Setaria italica Si036303m.g I
TCM_029931 Theobroma cacao TCM_029931 I
TCM_031363 Theobroma cacao TCM_031363 I
Thhalv10012308m.g Eutrema salsugineum Thhalv10012308m.g I
Thhalv10022353m.g Eutrema salsugineum Thhalv10022353m.g I
TRAES3BF108700110CFD_g Triticum aestivum TRAES3BF108700110CFD_g I
Traes_2AS_09457EDD8 Triticum aestivum Traes_2AS_09457EDD8 I
Traes_2AS_125195CDF Triticum aestivum Traes_2AS_125195CDF N
Traes_2BS_58AA829F4 Triticum aestivum Traes_2BS_58AA829F4 I
Traes_2BS_924D34AA1 Triticum aestivum Traes_2BS_924D34AA1 I
Traes_2BS_C116E5668 Triticum aestivum Traes_2BS_C116E5668 I
Traes_2DS_5DF921ABB Triticum aestivum Traes_2DS_5DF921ABB I
Traes_2DS_85FE89BC5 Triticum aestivum Traes_2DS_85FE89BC5 N
Traes_2DS_F5B34D422 Triticum aestivum Traes_2DS_F5B34D422 N
Traes_4AS_DBDA5E9C6 Triticum aestivum Traes_4AS_DBDA5E9C6 I
Traes_4DL_F0BE36C9D Triticum aestivum Traes_4DL_F0BE36C9D I
Traes_6AS_6F89CC969 Triticum aestivum Traes_6AS_6F89CC969 I
Traes_6DS_90A627C3F Triticum aestivum Traes_6DS_90A627C3F I
TRIUR3_29857 Triticum urartu TRIUR3_29857 I
TRIUR3_32458 Triticum urartu TRIUR3_32458 N
anac025 Vitis vinifera VIT_00s0375g00040 I
anac047 Vitis vinifera VIT_08s0007g07670 I
VIT_08s0040g02110 Vitis vinifera VIT_08s0040g02110 I
VIT_19s0014g03300 Vitis vinifera VIT_19s0014g03300 I