Pavir.Ea00566 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ea00566 T229240_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.842 0.740
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.560
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.400
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.400
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.400
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.400
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00566.1.p Homeodomain 97 149

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R004000 Aptenodytes forsteri Afo_R004000 N 0.000
Brh_R011240 Buceros rhinoceros Brh_R011240 N 0.000
ENSAMEG00000017562 Ailuropoda melanoleuca ENSAMEG00000017562 N 0.000
ENSAPLG00000007731 Anas platyrhynchos ENSAPLG00000007731 N 0.000
ZBTB41 Bos taurus ENSBTAG00000002291 N 0.000
ZBTB41 Canis familiaris ENSCAFG00000011381 N 0.000
ZBTB41 Callithrix jacchus ENSCJAG00000004794 N 0.000
ENSCSAG00000013610 Chlorocebus sabaeus ENSCSAG00000013610 N 0.000
ENSFALG00000002807 Ficedula albicollis ENSFALG00000002807 N 0.000
ZBTB41 Homo sapiens ENSG00000177888 N 0.000
zbtb41 Gasterosteus aculeatus ENSGACG00000016102 N 0.000
ENSGALG00000002305 Gallus gallus ENSGALG00000002305 N 0.000
ZBTB41 Gorilla gorilla ENSGGOG00000004843 N 0.000
ENSGMOG00000002344 Gadus morhua ENSGMOG00000002344 N 0.000
ZBTB41 Loxodonta africana ENSLAFG00000012902 N 0.000
ZBTB41 Monodelphis domestica ENSMODG00000012684 N 0.000
Zbtb41 Mus musculus ENSMUSG00000033964 N 0.000
ENSNLEG00000018056 Nomascus leucogenys ENSNLEG00000018056 N 0.000
ENSOARG00000015070 Ovis aries ENSOARG00000015070 N 0.000
ZBTB41 Oryctolagus cuniculus ENSOCUG00000014765 N 0.000
ZBTB41 Otolemur garnettii ENSOGAG00000012893 N 0.000
ENSONIG00000010729 Oreochromis niloticus ENSONIG00000010729 N 0.000
ENSP00000356375 Macaca fascicularis ENSP00000356375 N 0.000
ENSP00000356375-D1 Bos grunniens ENSP00000356375-D1 N 0.000
ENSPFOG00000006537 Poecilia formosa ENSPFOG00000006537 N 0.000
ENSPPYG00000000388 Pongo abelii ENSPPYG00000000388 N 0.000
ZBTB41 Pan troglodytes ENSPTRG00000001808 N 0.000
Zbtb41 Rattus norvegicus ENSRNOG00000011137 N 0.000
ZBTB41 Taeniopygia guttata ENSTGUG00000004282 N 0.000
zbtb41 Takifugu rubripes ENSTRUG00000009203 N 0.000
ZBTB41 Tursiops truncatus ENSTTRG00000008689 N 0.000
ZBTB41 Vicugna pacos ENSVPAG00000006551 N 0.000
ENSXMAG00000004794 Xiphophorus maculatus ENSXMAG00000004794 N 0.000
Gfo_R006641 Geospiza fortis Gfo_R006641 N 0.000
Tal_R010443 Tyto alba Tal_R010443 N 0.000