Pavir.Ia01087 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ia01087 T229293_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01087.1.p Homeodomain 28 87

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSACAG00000002961 Anolis carolinensis ENSACAG00000002961 I
ENSCSAG00000000724 Chlorocebus sabaeus ENSCSAG00000000724 I
TP73 Erinaceus europaeus ENSEEUG00000013128 I
TP73 Homo sapiens ENSG00000078900 D
TP73 Gorilla gorilla ENSGGOG00000015559 I
ENSMEUG00000000762 Macropus eugenii ENSMEUG00000000762 I
TP73 Macaca mulatta ENSMMUG00000016569 I
Trp63 Mus musculus ENSMUSG00000022510 D
Trp73 Mus musculus ENSMUSG00000029026 D
TP73 Otolemur garnettii ENSOGAG00000006041 I
ENSP00000367545 Macaca fascicularis ENSP00000367545 I
ENSPANG00000010294 Papio anubis ENSPANG00000010294 I
ENSPPYG00000001963 Pongo abelii ENSPPYG00000001963 I
Tp73 Rattus norvegicus ENSRNOG00000024707 I
TP73 Sus scrofa ENSSSCG00000025685 I
ENSSTOG00000029194 Ictidomys tridecemlineatus ENSSTOG00000029194 I