Pavir.Ia04841 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ia04841 T229302_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.817 0.895
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.817 0.895
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.812 0.842
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.812 0.842
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.812 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04841.1.p Homeodomain 25 85

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_209306 Agaricus bisporus AGABI2DRAFT_209306 I
BOTBODRAFT_69322 Botryobasidium botryosum BOTBODRAFT_69322 I
CC1G_09476 Coprinopsis cinerea CC1G_09476 I
CERSUDRAFT_114695 Ceriporiopsis subvermispora CERSUDRAFT_114695 I
CY34DRAFT_60788 Suillus luteus CY34DRAFT_60788 I
DACRYDRAFT_22521 Dacryopinax sp DACRYDRAFT_22521 I
DICSQDRAFT_88737 Dichomitus squalens DICSQDRAFT_88737 I
EDP45487.1 Malassezia globosa EDP45487.1 N
estExt_fgeneshMC_pg.C_30927 Mucor circinelloides estExt_fgeneshMC_pg.C_30927 N
FIBRA_01395 Fibroporia radiculosa FIBRA_01395 I
FOMPIDRAFT_1116881 Fomitopsis pinicola FOMPIDRAFT_1116881 I
GALMADRAFT_259271 Galerina marginata GALMADRAFT_259271 I
GLOTRDRAFT_118212 Gloeophyllum trabeum GLOTRDRAFT_118212 I
gwh2.4.337.1 Phanerochaete chrysosporium gwh2.4.337.1 I
HETIRDRAFT_238331 Heterobasidion irregulare HETIRDRAFT_238331 I
HYDPIDRAFT_89380 Hydnomerulius pinastri HYDPIDRAFT_89380 I
JAAARDRAFT_59018 Jaapia argillacea JAAARDRAFT_59018 I
K443DRAFT_308353 Laccaria amethystina K443DRAFT_308353 I
K443DRAFT_681331 Laccaria amethystina K443DRAFT_681331 I
LACBIDRAFT_167431 Laccaria bicolor LACBIDRAFT_167431 I
LACBIDRAFT_254568 Laccaria bicolor LACBIDRAFT_254568 I
LACBIDRAFT_254611 Laccaria bicolor LACBIDRAFT_254611 I
M378DRAFT_74968 Amanita muscaria M378DRAFT_74968 I
M404DRAFT_1005497 Pisolithus tinctorius M404DRAFT_1005497 I
M407DRAFT_11510 Tulasnella calospora M407DRAFT_11510 I
M408DRAFT_332528 Serendipita vermifera M408DRAFT_332528 I
M413DRAFT_449306 Hebeloma cylindrosporum M413DRAFT_449306 I
Moror_16036 Moniliophthora roreri Moror_16036 I
MSY001_1466 Malassezia sympodialis MSY001_1466 N
PAXINDRAFT_140170 Paxillus involutus PAXINDRAFT_140170 I
PAXRUDRAFT_36013 Paxillus rubicundulus PAXRUDRAFT_36013 I
PHLGIDRAFT_100651 Phlebiopsis gigantea PHLGIDRAFT_100651 I
PILCRDRAFT_528412 Piloderma croceum PILCRDRAFT_528412 I
PISMIDRAFT_102262 Pisolithus microcarpus PISMIDRAFT_102262 I
PLEOSDRAFT_1032088 Pleurotus ostreatus PLEOSDRAFT_1032088 I
POSPLDRAFT_96343 Postia placenta POSPLDRAFT_96343 I
SCHCODRAFT_110010 Schizophyllum commune SCHCODRAFT_110010 D
SERLA73DRAFT_126671 Serpula lacrymans SERLA73DRAFT_126671 I
V565_176590 Rhizoctonia solani V565_176590 I
WALSEDRAFT_60818 Wallemia sebi WALSEDRAFT_60818 I