Pavir.J10000 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J10000 T229335_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.694 0.667
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.629 0.487
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.629 0.487
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.629 0.487
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.629 0.487
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J10000.1.p Homeodomain 237 277

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

886 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_016450 Acremonium chrysogenum ACRE_016450 N 0.000
BBA_07446 Beauveria bassiana BBA_07446 N 0.000
CCM_05113 Cordyceps militaris CCM_05113 N 0.000
CFIO01_10250 Colletotrichum fioriniae CFIO01_10250 N 0.000
CGGC5_3246 Colletotrichum gloeosporioides CGGC5_3246 N 0.000
CH063_06226 Colletotrichum higginsianum CH063_06226 N 0.000
Cob_01104 Colletotrichum orbiculare Cob_01104 N 0.000
CPUR_08686 Claviceps purpurea CPUR_08686 N 0.000
CSUB01_00584 Colletotrichum sublineola CSUB01_00584 N 0.000
e_gw1.18.1597.1 Nectria haematococca e_gw1.18.1597.1 N 0.000
FFUJ_04361 Fusarium fujikuroi FFUJ_04361 I 0.000
FGRRES_09495 Fusarium graminearum FGRRES_09495 N 0.000
FOXG_06191 Fusarium oxysporum FOXG_06191 I 0.000
FPSE_10753 Fusarium pseudograminearum FPSE_10753 N 0.000
FVEG_04045 Fusarium verticillioides FVEG_04045 I 0.000
GLRG_05436 Colletotrichum graminicola GLRG_05436 N 0.000
MAC_02687 Metarhizium acridum MAC_02687 N 0.000
MAJ_00221 Metarhizium majus MAJ_00221 N 0.000
MAM_02840 Metarhizium album MAM_02840 N 0.000
MANI_018633 Metarhizium anisopliae MANI_018633 N 0.000
MBR_02416 Metarhizium brunneum MBR_02416 N 0.000
MGG_02493 Magnaporthe oryzae MGG_02493 N 0.000
MPH_11315 Macrophomina phaseolina MPH_11315 N 0.000
NechaG32416 Fusarium solani NechaG32416 N 0.000
S40285_04138 Stachybotrys chlorohalonata S40285_04138 N 0.000
S40288_07815 Stachybotrys chartarum S40288_07815 N 0.000
SAPIO_CDS8133 Scedosporium apiospermum SAPIO_CDS8133 N 0.000
TRIATDRAFT_212147 Trichoderma atroviride TRIATDRAFT_212147 N 0.000
TRIREDRAFT_57100 Trichoderma reesei TRIREDRAFT_57100 N 0.000
TRIVIDRAFT_194623 Trichoderma virens TRIVIDRAFT_194623 N 0.000
UCRNP2_9340 Neofusicoccum parvum UCRNP2_9340 N 0.000
UCRPA7_784 Togninia minima UCRPA7_784 N 0.000
UV8b_863 Ustilaginoidea virens UV8b_863 N 0.000
VDAG_05527 Verticillium dahliae VDAG_05527 I 0.000
VDBG_07957 Verticillium alfalfae VDBG_07957 I 0.000
VDBG_07957 Verticillium albo atrum VDBG_07957 I 0.000
VHEMI06672 Torrubiella hemipterigena VHEMI06672 N 0.000
W97_07908 Coniosporium apollinis W97_07908 N 0.000
X797_000454 Metarhizium robertsii X797_000454 N 0.000