Pavir.J20342 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J20342 T229348_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.857 0.842
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.798 0.877
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.798 0.877
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.796 0.825
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.796 0.825
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.796 0.825
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.702
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.763 0.860
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.763 0.860
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.763 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J20342.1.p Homeodomain 164 220

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

695 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_04043 Capronia coronata A1O1_04043 N 0.000
A1O3_01459 Capronia epimyces A1O3_01459 N 0.000
A1O5_07765 Cladophialophora psammophila A1O5_07765 N 0.000
A1O9_03914 Exophiala aquamarina A1O9_03914 N 0.000
AACERI_AaceriAFR136C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR136C I 0.000
ACRE_057790 Acremonium chrysogenum ACRE_057790 N 0.000
AGOS_AFR136C Ashbya gossypii AGOS_AFR136C I 0.000
AOL_s00043g47 Arthrobotrys oligospora AOL_s00043g47 N 0.000
ARB_06070 Arthroderma benhamiae ARB_06070 N 0.000
AUEXF2481DRAFT_4075 Aureobasidium subglaciale AUEXF2481DRAFT_4075 N 0.000
BAUCODRAFT_151200 Baudoinia compniacensis BAUCODRAFT_151200 N 0.000
BBA_04216 Beauveria bassiana BBA_04216 N 0.000
Bcin02g02960 Botrytis cinerea Bcin02g02960 N 0.000
BDDG_07871 Blastomyces dermatitidis BDDG_07871 N 0.000
BGHDH14_bgh06000 Blumeria graminis BGHDH14_bgh06000 N 0.000
BN7_3380 Wickerhamomyces ciferrii BN7_3380 I 0.000
BN7_4359 Wickerhamomyces ciferrii BN7_4359 N 0.000
CADAFLAG00013433 Aspergillus flavus CADAFLAG00013433 N 0.000
AFUA_4G04502 Aspergillus fumigatus CADAFUAG00001430 N 0.000
CADANGAG00010969 Aspergillus niger CADANGAG00010969 N 0.000
CADAORAG00012206 Aspergillus oryzae CADAORAG00012206 N 0.000
ATEG_02742 Aspergillus terreus CADATEAG00003788 N 0.000
NFIA_028860 Neosartorya fischeri CADNFIAG00002767 N 0.000
CAGL0I07183g Candida glabrata CAGL0I07183g I 0.000
CANTEDRAFT_132848 Candida tenuis CANTEDRAFT_132848 I 0.000
CaO19.454 Candida albicans CaO19.454 I 0.000
CaO19.8085 Candida albicans CaO19.8085 I 0.000
CCM_02465 Cordyceps militaris CCM_02465 N 0.000
CD36_31370 Candida dubliniensis CD36_31370 N 0.000
CFIO01_04547 Colletotrichum fioriniae CFIO01_04547 N 0.000
CGGC5_1651 Colletotrichum gloeosporioides CGGC5_1651 N 0.000
CH063_04335 Colletotrichum higginsianum CH063_04335 N 0.000
CIMG_08549 Coccidioides immitis CIMG_08549 N 0.000
CLUG_03610 Candida lusitaniae CLUG_03610 I 0.000
CLUG_03610 Clavispora lusitaniae CLUG_03610 I 0.000
CMQ_3588 Grosmannia clavigera CMQ_3588 N 0.000
Cob_03924 Colletotrichum orbiculare Cob_03924 N 0.000
COCC4DRAFT_137933 Bipolaris maydis COCC4DRAFT_137933 N 0.000
COCCADRAFT_23204 Bipolaris zeicola COCCADRAFT_23204 N 0.000
COCMIDRAFT_90826 Bipolaris oryzae COCMIDRAFT_90826 N 0.000
COCSADRAFT_237465 Bipolaris sorokiniana COCSADRAFT_237465 N 0.000
COCVIDRAFT_100540 Bipolaris victoriae COCVIDRAFT_100540 N 0.000
CORT_0F01150 Candida orthopsilosis CORT_0F01150 N 0.000
CPAG_02000 Candida parapsilosis CPAG_02000 N 0.000
CPAG_04153 Candida parapsilosis CPAG_04153 N 0.000
CPC735_062070 Coccidioides posadasii CPC735_062070 N 0.000
CPUR_00409 Claviceps purpurea CPUR_00409 N 0.000
CSUB01_10826 Colletotrichum sublineola CSUB01_10826 N 0.000
CTRG_00655 Candida tropicalis CTRG_00655 I 0.000
DEHA2G10560g Debaryomyces hansenii DEHA2G10560g I 0.000
DEHA2G20636g Debaryomyces hansenii DEHA2G20636g I 0.000
DOTSEDRAFT_73714 Dothistroma septosporum DOTSEDRAFT_73714 N 0.000
DRE_06964 Drechslerella stenobrocha DRE_06964 I 0.000
E5Q_05471 Mixia osmundae E5Q_05471 I 0.000
Ecym_2312 Eremothecium cymbalariae Ecym_2312 I 0.000
ENSLACG00000010304 Latimeria chalumnae ENSLACG00000010304 I 0.000
HSF4 Loxodonta africana ENSLAFG00000021984 I 0.000
EPUS_01915 Endocarpon pusillum EPUS_01915 N 0.000
estExt_fgenesh1_pg.C_chr_6.10474 Pichia stipitis estExt_fgenesh1_pg.C_chr_6.10474 I 0.000
estExt_fgenesh2_pg.C_100130 Neurospora discreta estExt_fgenesh2_pg.C_100130 N 0.000
estExt_Genewise1.C_280011 Phycomyces blakesleeanus estExt_Genewise1.C_280011 N 0.000
estExt_Genewise1Plus.C_21911 Cryphonectria parasitica estExt_Genewise1Plus.C_21911 N 0.000
estExt_Genewise1Plus.C_50691 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_50691 N 0.000
EURHEDRAFT_462177 Aspergillus ruber EURHEDRAFT_462177 N 0.000
EV44_g0556 Erysiphe necator EV44_g0556 N 0.000
e_gw1.12.536.1 Nectria haematococca e_gw1.12.536.1 N 0.000
e_gw1.3.1300.1 Mycosphaerella graminicola e_gw1.3.1300.1 N 0.000
F503_06440 Ophiostoma piceae uamh F503_06440 N 0.000
FFUJ_08331 Fusarium fujikuroi FFUJ_08331 N 0.000
fgenesh1_pg.00795_#_26 Aspergillus carbonarius fgenesh1_pg.00795_#_26 N 0.000
fgeneshMC_pg.4_#_769 Mucor circinelloides fgeneshMC_pg.4_#_769 I 0.000
FGRRES_10868 Fusarium graminearum FGRRES_10868 N 0.000
FOXG_12803 Fusarium oxysporum FOXG_12803 N 0.000
FPSE_09836 Fusarium pseudograminearum FPSE_09836 N 0.000
FVEG_11544 Fusarium verticillioides FVEG_11544 N 0.000
G210_0510 Candida maltosa G210_0510 I 0.000
G647_06910 Cladophialophora carrionii G647_06910 I 0.000
GGTG_10719 Gaeumannomyces graminis GGTG_10719 N 0.000
GLRG_05271 Colletotrichum graminicola GLRG_05271 N 0.000
GMDG_00035 Pseudogymnoascus destructans GMDG_00035 N 0.000
GNLVRS01_PISO0A02134g Millerozyma farinosa GNLVRS01_PISO0A02134g N 0.000
GNLVRS01_PISO0B02289g Millerozyma farinosa GNLVRS01_PISO0B02289g N 0.000
GNLVRS01_PISO0E07748g Millerozyma farinosa GNLVRS01_PISO0E07748g I 0.000
GNLVRS01_PISO0F09091g Millerozyma farinosa GNLVRS01_PISO0F09091g I 0.000
GSTUM_00004466001 Tuber melanosporum GSTUM_00004466001 N 0.000
gw1.18.319.1 Mycosphaerella fijiensis gw1.18.319.1 N 0.000
H072_3239 Dactylellina haptotyla H072_3239 N 0.000
H101_00214 Trichophyton interdigitale H101_00214 N 0.000
H102_03074 Trichophyton rubrum H102_03074 N 0.000
H105_03092 Trichophyton soudanense H105_03092 N 0.000
HCBG_08291 Histoplasma capsulatum HCBG_08291 N 0.000
HMPREF1120_08552 Exophiala dermatitidis HMPREF1120_08552 N 0.000
HMPREF1541_00864 Cyphellophora europaea HMPREF1541_00864 N 0.000
HMPREF1624_03486 Sporothrix schenckii HMPREF1624_03486 N 0.000
HPODL_00954 Ogataea parapolymorpha HPODL_00954 I 0.000
K437DRAFT_224239 Tilletiaria anomala K437DRAFT_224239 I 0.000
KLLA0_E03191g Kluyveromyces lactis KLLA0_E03191g I 0.000
KLTH0F14982g Lachancea thermotolerans KLTH0F14982g I 0.000
KLTH0F14982g Kluyveromyces thermotolerans KLTH0F14982g I 0.000
KUCA_T00005449001 Kuraishia capsulata KUCA_T00005449001 I 0.000
Kwal_21254 Kluyveromyces waltii Kwal_21254 I 0.000
LEMA_P076740.1 Leptosphaeria maculans LEMA_P076740.1 N 0.000
M437DRAFT_56721 Aureobasidium melanogenum M437DRAFT_56721 N 0.000
M438DRAFT_272047 Aureobasidium pullulans M438DRAFT_272047 N 0.000
M7I_3486 Glarea lozoyensis M7I_3486 N 0.000
MAJ_01594 Metarhizium majus MAJ_01594 N 0.000
MAM_02919 Metarhizium album MAM_02919 N 0.000
MANI_027126 Metarhizium anisopliae MANI_027126 N 0.000
MAPG_00013 Magnaporthe poae MAPG_00013 N 0.000
MBM_05529 Marssonina brunnea MBM_05529 N 0.000
MBR_04590 Metarhizium brunneum MBR_04590 N 0.000
MCYG_02334 Microsporum canis MCYG_02334 N 0.000
MGG_06971 Magnaporthe oryzae MGG_06971 N 0.000
MGU_04157 Metarhizium guizhouense MGU_04157 N 0.000
MGYG_07335 Microsporum gypseum MGYG_07335 N 0.000
MPH_02552 Macrophomina phaseolina MPH_02552 N 0.000
MYCFIDRAFT_146678 Pseudocercospora fijiensis MYCFIDRAFT_146678 N 0.000
Mycgr3G38379 Zymoseptoria tritici Mycgr3G38379 N 0.000
MYCTH_2312138 Myceliophthora thermophila MYCTH_2312138 N 0.000
NCAS_0E03870 Naumovozyma castellii NCAS_0E03870 I 0.000
NCAS_0H02280 Naumovozyma castellii NCAS_0H02280 I 0.000
hsf-2 Neurospora crassa NCU08480 N 0.000
NDAI_0C01380 Naumovozyma dairenensis NDAI_0C01380 I 0.000
NechaG40194 Fusarium solani NechaG40194 N 0.000
OCS_04575 Ophiocordyceps sinensis OCS_04575 N 0.000
OIDMADRAFT_181379 Oidiodendron maius OIDMADRAFT_181379 N 0.000
PAAG_01459 Paracoccidioides sp lutzii PAAG_01459 N 0.000
PABG_01939 Paracoccidioides brasiliensis PABG_01939 N 0.000
Pc13g06670 Penicillium chrysogenum Pc13g06670 N 0.000
PCH_Pc13g06670 Penicillium rubens PCH_Pc13g06670 N 0.000
PDE_05764 Penicillium oxalicum PDE_05764 N 0.000
PDIP_15740 Penicillium digitatum PDIP_15740 N 0.000
PEX1_020890 Penicillium expansum PEX1_020890 N 0.000
PFICI_09422 Pestalotiopsis fici PFICI_09422 I 0.000
PFL1_03124 Pseudozyma flocculosa PFL1_03124 N 0.000
PGUG_03027 Candida guilliermondii PGUG_03027 N 0.000
PGUG_03027 Meyerozyma guilliermondii PGUG_03027 N 0.000
PGUG_04779 Candida guilliermondii PGUG_04779 I 0.000
PGUG_04779 Meyerozyma guilliermondii PGUG_04779 I 0.000
PHSY_000528 Pseudozyma hubeiensis PHSY_000528 N 0.000
PICST_66881 Scheffersomyces stipitis PICST_66881 N 0.000
PICST_68146 Scheffersomyces stipitis PICST_68146 I 0.000
PMAA_085950 Talaromyces marneffei PMAA_085950 N 0.000
PMAA_085950 Penicillium marneffei PMAA_085950 N 0.000
PSEUBRA_SCAF16g05334 Pseudozyma brasiliensis PSEUBRA_SCAF16g05334 N 0.000
PTRG_08428 Pyrenophora triticirepentis PTRG_08428 N 0.000
PTT_06554 Pyrenophora teres PTT_06554 N 0.000
PV04_05986 Capronia semiimmersa PV04_05986 N 0.000
PV05_05603 Exophiala xenobiotica PV05_05603 N 0.000
PV06_00857 Exophiala oligosperma PV06_00857 N 0.000
PV07_04143 Cladophialophora immunda PV07_04143 N 0.000
PV08_00880 Exophiala spinifera PV08_00880 N 0.000
PV09_01119 Verruconis gallopava PV09_01119 N 0.000
PV10_07698 Exophiala mesophila PV10_07698 N 0.000
PV11_00595 Exophiala sideris PV11_00595 N 0.000
PVAR5_3532 Byssochlamys spectabilis PVAR5_3532 N 0.000
S40285_02996 Stachybotrys chlorohalonata S40285_02996 N 0.000
S40288_00568 Stachybotrys chartarum S40288_00568 N 0.000
SAKL0G03586g Lachancea kluyveri SAKL0G03586g I 0.000
SAPIO_CDS6018 Scedosporium apiospermum SAPIO_CDS6018 N 0.000
SBOR_3380 Sclerotinia borealis SBOR_3380 N 0.000
Scas_Contig645.15 Saccharomyces castellii Scas_Contig645.15 I 0.000
Scas_Contig714.29 Saccharomyces castellii Scas_Contig714.29 I 0.000
SEPMUDRAFT_47596 Sphaerulina musiva SEPMUDRAFT_47596 N 0.000
SETTUDRAFT_34274 Setosphaeria turcica SETTUDRAFT_34274 N 0.000
SMAC_00003 Sordaria macrospora SMAC_00003 N 0.000
SNOG_08309 Stagonospora nodorum SNOG_08309 N 0.000
SNOG_08309 Phaeosphaeria nodorum SNOG_08309 I 0.000
SPPG_01116 Spizellomyces punctatus SPPG_01116 I 0.000
SPPG_05445 Spizellomyces punctatus SPPG_05445 I 0.000
sr13089 Sporisorium reilianum sr13089 N 0.000
SS1G_01646 Sclerotinia sclerotiorum SS1G_01646 N 0.000
TDEL_0A03400 Torulaspora delbrueckii TDEL_0A03400 I 0.000
TEQG_06289 Trichophyton equinum TEQG_06289 N 0.000
TESG_06359 Trichophyton tonsurans TESG_06359 N 0.000
THITE_2123849 Thielavia terrestris THITE_2123849 N 0.000
TRIATDRAFT_174226 Trichoderma atroviride TRIATDRAFT_174226 N 0.000
TRIREDRAFT_27357 Trichoderma reesei TRIREDRAFT_27357 N 0.000
TRIVIDRAFT_125026 Trichoderma virens TRIVIDRAFT_125026 N 0.000
TRV_00290 Trichophyton verrucosum TRV_00290 N 0.000
TSTA_121070 Talaromyces stipitatus TSTA_121070 N 0.000
U727_0043017041 Penicillium solitum U727_0043017041 N 0.000
UCREL1_4627 Eutypa lata UCREL1_4627 N 0.000
UCRPA7_905 Togninia minima UCRPA7_905 N 0.000
UHOR_03142 Ustilago hordei UHOR_03142 N 0.000
UM05182 Ustilago maydis UM05182 N 0.000
UREG_02611 Uncinocarpus reesii UREG_02611 N 0.000
UV8b_4500 Ustilaginoidea virens UV8b_4500 N 0.000
V499_07683 Pseudogymnoascus pannorum V499_07683 N 0.000
VDAG_07492 Verticillium dahliae VDAG_07492 N 0.000
VDBG_05547 Verticillium albo atrum VDBG_05547 N 0.000
VDBG_05547 Verticillium alfalfae VDBG_05547 N 0.000
VHEMI09490 Torrubiella hemipterigena VHEMI09490 N 0.000
W97_04615 Coniosporium apollinis W97_04615 N 0.000
X797_007282 Metarhizium robertsii X797_007282 N 0.000
YALI0_D04785g Yarrowia lipolytica YALI0_D04785g I 0.000
Z517_00530 Fonsecaea pedrosoi Z517_00530 N 0.000
Z518_08730 Rhinocladiella mackenziei Z518_08730 N 0.000
Z519_07578 Cladophialophora bantiana Z519_07578 N 0.000
ZBAI_09477 Zygosaccharomyces bailii ZBAI_09477 I 0.000
ZYRO0D11286g Zygosaccharomyces rouxii ZYRO0D11286g I 0.000