Pavir.J24358 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J24358 T229356_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.683 0.889
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.683 0.889
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.683 0.889
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.679 0.852
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.679 0.852
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J24358.1.p Homeodomain 21 78

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

317 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_038710 Albugo laibachii ALNC14_038710 N
ALNC14_045170 Albugo laibachii ALNC14_045170 N
F443_08670 Phytophthora parasitica F443_08670 N
fgenesh_scip_prom.28083.5589 Phytophthora lateralis fgenesh_scip_prom.28083.5589 N
fgenesh_scip_prom.46568.4406 Phytophthora kernoviae fgenesh_scip_prom.46568.4406 N
HpaG811065 Hyaloperonospora arabidopsidis HpaG811065 N
maker-pag1_scaffold_818-snap-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_818-snap-gene-0.3 N
maker-pir_contig_67-snap-gene-0.23 Pythium irregulare maker-pir_contig_67-snap-gene-0.23 N
maker-pve_contig_870-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_870-fgenesh-gene-0.0 N
Phyra86538 Phytophthora ramorum Phyra86538 N
Physo140839 Phytophthora sojae Physo140839 N
PITG_06748 Phytophthora infestans PITG_06748 N
PYU1_G010470 Pythium ultimum PYU1_G010470 N
SPRG_00677 Saprolegnia parasitica SPRG_00677 N