Pavir.J36471 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J36471 T229372_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36471.1.p Homeodomain 15 71

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28102.m000106 Ricinus communis 28102.m000106 I 0.605
29816.m000691 Ricinus communis 29816.m000691 I 0.638
30039.m000243 Ricinus communis 30039.m000243 I 0.620
AMTR_s00010p00122680 Amborella trichopoda AMTR_s00010p00122680 I 0.605
AMTR_s00023p00181320 Amborella trichopoda AMTR_s00023p00181320 I 0.628
AMTR_s00051p00020930 Amborella trichopoda AMTR_s00051p00020930 I 0.601
Aquca_046_00011 Aquilegia coerulea Aquca_046_00011 I 0.632
Aquca_091_00003 Aquilegia coerulea Aquca_091_00003 I 0.614
WOX3 Arabidopsis thaliana AT2G28610 I 0.630
WOX1 Arabidopsis thaliana AT3G18010 I 0.605
WOX2 Oryza indica BGIOSGA019069 I 0.602
WOX3 Oryza indica BGIOSGA036831 I 0.630
Bo3g040080 Brassica oleracea Bo3g040080 I 0.626
Bo3g071360 Brassica oleracea Bo3g071360 I 0.605
Bo5g121370 Brassica oleracea Bo5g121370 I 0.605
Bostr.19424s0870 Boechera stricta Bostr.19424s0870 I 0.605
Bostr.27991s0061 Boechera stricta Bostr.27991s0061 I 0.630
Bra000484 Brassica rapa Bra000484 I 0.626
Bra001694 Brassica rapa Bra001694 I 0.605
Bra022267 Brassica rapa Bra022267 I 0.605
BRADI2G37650 Brachypodium distachyon BRADI2G37650 I 0.629
Cagra.0456s0008 Capsella grandiflora Cagra.0456s0008 I 0.605
Cagra.5013s0004 Capsella grandiflora Cagra.5013s0004 I 0.630
Carubv10013929m.g Capsella rubella Carubv10013929m.g I 0.605
Carubv10024767m.g Capsella rubella Carubv10024767m.g I 0.630
cassava13526.valid.m1 Manihot esculenta cassava13526.valid.m1 I 0.607
cassava16590.m1 Manihot esculenta cassava16590.m1 I 0.605
cassava26411.m1 Manihot esculenta cassava26411.m1 I 0.620
cassava32199.m1 Manihot esculenta cassava32199.m1 I 0.607
cassava41581.m1 Manihot esculenta cassava41581.m1 I 0.605
Ca_06508 Cicer arietinum Ca_06508 I 0.607
Ca_10352 Cicer arietinum Ca_10352 I 0.605
chr4.CM0042.2350.nc Lotus japonicus chr4.CM0042.2350.nc I 0.605
Ciclev10008783m.g Citrus clementina Ciclev10008783m.g I 0.605
Ciclev10017657m.g Citrus clementina Ciclev10017657m.g I 0.638
Ciclev10030293m.g Citrus clementina Ciclev10030293m.g I 0.660
Cla018739 Citrullus lanatus Cla018739 I 0.605
Cla019215 Citrullus lanatus Cla019215 I 0.601
Cucsa.111520 Cucumis sativus Cucsa.111520 I 0.601
Cucsa.121900 Cucumis sativus Cucsa.121900 I 0.605
Eucgr.B00945 Eucalyptus grandis Eucgr.B00945 I 0.605
Eucgr.B02435 Eucalyptus grandis Eucgr.B02435 I 0.628
evm.TU.supercontig_139.11 Carica papaya evm.TU.supercontig_139.11 I 0.606
evm.TU.supercontig_3.402 Carica papaya evm.TU.supercontig_3.402 I 0.605
evm.TU.supercontig_65.159 Carica papaya evm.TU.supercontig_65.159 I 0.607
F775_04029 Aegilops tauschii F775_04029 I 0.633
F775_52565 Aegilops tauschii F775_52565 I 0.630
fgenesh2_kg.143__1__AT3G18010.1 Arabidopsis lyrata fgenesh2_kg.143__1__AT3G18010.1 I 0.605
fgenesh2_kg.3__1989__AT3G18010.1 Arabidopsis lyrata fgenesh2_kg.3__1989__AT3G18010.1 I 0.605
PRS Arabidopsis lyrata fgenesh2_kg.4__832__AT2G28610.1 I 0.630
gene09389-v1.0-hybrid Fragaria vesca gene09389-v1.0-hybrid I 0.605
gene14025-v1.0-hybrid Fragaria vesca gene14025-v1.0-hybrid I 0.620
GLYMA05G33850 Glycine max GLYMA05G33850 I 0.605
GLYMA07G11372 Glycine max GLYMA07G11372 I 0.605
GLYMA07G15710 Glycine max GLYMA07G15710 I 0.636
GLYMA07G34425 Glycine max GLYMA07G34425 I 0.614
GLYMA08G05831 Glycine max GLYMA08G05831 I 0.605
GLYMA09G30831 Glycine max GLYMA09G30831 I 0.605
GLYMA18G39520 Glycine max GLYMA18G39520 I 0.636
GLYMA20G02161 Glycine max GLYMA20G02161 I 0.615
Gorai.002G178400 Gossypium raimondii Gorai.002G178400 I 0.638
Gorai.003G138900 Gossypium raimondii Gorai.003G138900 I 0.606
Gorai.008G289800 Gossypium raimondii Gorai.008G289800 I 0.605
Gorai.009G103500 Gossypium raimondii Gorai.009G103500 I 0.647
GRMZM2G069028 Zea mays GRMZM2G069028 I 0.630
GRMZM2G122537 Zea mays GRMZM2G122537 I 0.666
GRMZM2G140083 Zea mays GRMZM2G140083 I 0.666
GSMUA_Achr2G16080_001 Musa acuminata GSMUA_Achr2G16080_001 I 0.630
GSMUA_Achr4G30610_001 Musa acuminata GSMUA_Achr4G30610_001 I 0.628
GSMUA_Achr7G18230_001 Musa acuminata GSMUA_Achr7G18230_001 I 0.630
GSMUA_Achr8G02040_001 Musa acuminata GSMUA_Achr8G02040_001 I 0.622
GSMUA_Achr9G04090_001 Musa acuminata GSMUA_Achr9G04090_001 I 0.630
LjSGA_059316.1 Lotus japonicus LjSGA_059316.1 I 0.609
LjSGA_115909.1 Lotus japonicus LjSGA_115909.1 I 0.605
LPERR05G01200 Leersia perrieri LPERR05G01200 I 0.602
LPERR11G00110 Leersia perrieri LPERR11G00110 I 0.630
LPERR12G00390 Leersia perrieri LPERR12G00390 I 0.630
Lus10018011.g Linum usitatissimum Lus10018011.g I 0.605
Lus10042007.g Linum usitatissimum Lus10042007.g I 0.605
MDP0000144307 Malus domestica MDP0000144307 I 0.605
MDP0000163159 Malus domestica MDP0000163159 I 0.620
MDP0000219162 Malus domestica MDP0000219162 I 0.605
MDP0000293200 Malus domestica MDP0000293200 I 0.620
MDP0000445859 Malus domestica MDP0000445859 I 0.605
mgf021746m Mimulus guttatus mgf021746m I 0.614
MLOC_7772 Hordeum vulgare MLOC_7772 I 0.630
MTR_4g084550 Medicago truncatula MTR_4g084550 I 0.607
MTR_7g060630 Medicago truncatula MTR_7g060630 I 0.636
MTR_8g107210 Medicago truncatula MTR_8g107210 I 0.605
OB05G11440 Oryza brachyantha OB05G11440 I 0.602
OB05G19220 Oryza brachyantha OB05G19220 I 0.630
OBART05G01300 Oryza barthii OBART05G01300 I 0.602
OBART11G00060 Oryza barthii OBART11G00060 I 0.630
OGLUM05G01320 Oryza glumaepatula OGLUM05G01320 I 0.602
OGLUM11G00100 Oryza glumaepatula OGLUM11G00100 I 0.630
OGLUM12G00010 Oryza glumaepatula OGLUM12G00010 I 0.630
OLONG_026278 Oryza longistaminata OLONG_026278 I 0.630
OMERI05G01360 Oryza meridionalis OMERI05G01360 I 0.602
OMERI11G00160 Oryza meridionalis OMERI11G00160 I 0.630
ONIVA05G01350 Oryza nivara ONIVA05G01350 I 0.602
ONIVA11G00010 Oryza nivara ONIVA11G00010 I 0.630
ONIVA12G00010 Oryza nivara ONIVA12G00010 I 0.630
OPUNC11G00180 Oryza punctata OPUNC11G00180 I 0.630
OPUNC12G00190 Oryza punctata OPUNC12G00190 I 0.630
orange1.1g035594m.g Citrus sinensis orange1.1g035594m.g I 0.638
orange1.1g039144m.g Citrus sinensis orange1.1g039144m.g I 0.660
orange1.1g043602m.g Citrus sinensis orange1.1g043602m.g I 0.605
ORGLA11G0000600 Oryza glaberrima ORGLA11G0000600 I 0.630
ORUFI04G30250 Oryza rufipogon ORUFI04G30250 I 0.630
ORUFI05G01360 Oryza rufipogon ORUFI05G01360 I 0.602
WOX2 Oryza sativa OS05G0118700 I 0.602
OS11G0102100 Oryza sativa OS11G0102100 I 0.630
OS12G0101600 Oryza sativa OS12G0101600 I 0.630
Pavir.J22602 Panicum virgatum Pavir.J22602 I 0.666
Pavir.J24082 Panicum virgatum Pavir.J24082 I 0.630
Pavir.J34412 Panicum virgatum Pavir.J34412 I 0.630
PGSC0003DMG400005670 Solanum tuberosum PGSC0003DMG400005670 I 0.605
PK07906.1 Cannabis sativa PK07906.1 I 0.605
Pm000753 Prunus mume Pm000753 I 0.620
Pm025084 Prunus mume Pm025084 I 0.605
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.601
POPTR_0012s04510 Populus trichocarpa POPTR_0012s04510 I 0.607
POPTR_0015s04520 Populus trichocarpa POPTR_0015s04520 I 0.607
PRUPE_ppa017419mg Prunus persica PRUPE_ppa017419mg I 0.605
PRUPE_ppa019793mg Prunus persica PRUPE_ppa019793mg I 0.620
SapurV1A.0357s0040 Salix purpurea SapurV1A.0357s0040 I 0.607
SapurV1A.0406s0010 Salix purpurea SapurV1A.0406s0010 I 0.607
SapurV1A.0718s0010 Salix purpurea SapurV1A.0718s0010 I 0.607
Sb05g003490 Sorghum bicolor Sb05g003490 I 0.630
Sb09g002010 Sorghum bicolor Sb09g002010 I 0.666
Si012474m.g Setaria italica Si012474m.g I 0.630
Si022944m.g Setaria italica Si022944m.g I 0.666
Si027421m.g Setaria italica Si027421m.g I 0.630
Solyc03g118770.2 Solanum lycopersicum Solyc03g118770.2 I 0.605
TCM_010888 Theobroma cacao TCM_010888 I 0.606
TCM_012755 Theobroma cacao TCM_012755 I 0.605
TCM_041963 Theobroma cacao TCM_041963 I 0.620
Thhalv10017168m.g Eutrema salsugineum Thhalv10017168m.g I 0.630
Thhalv10022042m.g Eutrema salsugineum Thhalv10022042m.g I 0.605
Traes_1AS_3CA8D36FB Triticum aestivum Traes_1AS_3CA8D36FB I 0.633
Traes_1BS_C908081B8 Triticum aestivum Traes_1BS_C908081B8 I 0.633
Traes_1DS_E50CDDF05 Triticum aestivum Traes_1DS_E50CDDF05 I 0.633
Traes_5BL_2E6FA4A97 Triticum aestivum Traes_5BL_2E6FA4A97 I 0.630
Traes_5DL_193218298 Triticum aestivum Traes_5DL_193218298 I 0.630
TRIUR3_16981 Triticum urartu TRIUR3_16981 I 0.634
WOX1 Vitis vinifera VIT_01s0011g05020 I 0.638
PRS Vitis vinifera VIT_06s0004g03780 I 0.624
VIT_17s0000g02460 Vitis vinifera VIT_17s0000g02460 I 0.605