LCUP005858 (Lucilia cuprina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 LCUP005858 T229911_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.827 0.652
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.827 0.652
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.827 0.652
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.827 0.652
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.827 0.652
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.827 0.652
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.827 0.652
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
Rx
M03840_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Rx_1 		0.377 1.000
Rx
M03841_2.00 		Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN		 SELEX
Nitta et al.(2015)
Rx_2 		0.377 1.000
Rx
M06520_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0202.1 		0.377 1.000
Rx
M06317_2.00 		Drosophila melanogaster
VYTAATTR
YAATTARB		 B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617 		0.377 1.000
Rx
M06318_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP005858-PA Homeodomain 630 675

Links

Other Homeodomain family TFs
Other Lucilia cuprina TFs

1307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSACAG00000029030 Anolis carolinensis ENSACAG00000029030 N
ENSAMXG00000025528 Astyanax mexicanus ENSAMXG00000025528 I
ENSAMXG00000025840 Astyanax mexicanus ENSAMXG00000025840 N
nfil3-2 Danio rerio ENSDARG00000043237 N
nfil3-5 Danio rerio ENSDARG00000094965 N
ENSGACG00000006400 Gasterosteus aculeatus ENSGACG00000006400 I
ENSGACG00000019140 Gasterosteus aculeatus ENSGACG00000019140 N
ENSGMOG00000004386 Gadus morhua ENSGMOG00000004386 N
ENSGMOG00000008894 Gadus morhua ENSGMOG00000008894 I
ENSLACG00000009977 Latimeria chalumnae ENSLACG00000009977 N
ENSLOCG00000018299 Lepisosteus oculatus ENSLOCG00000018299 I
ENSONIG00000008057 Oreochromis niloticus ENSONIG00000008057 N
ENSONIG00000018891 Oreochromis niloticus ENSONIG00000018891 I
nfil3-5 Oryzias latipes ENSORLG00000014730 N
ENSORLG00000016478 Oryzias latipes ENSORLG00000016478 I
ENSPFOG00000020649 Poecilia formosa ENSPFOG00000020649 N
ENSPFOG00000020687 Poecilia formosa ENSPFOG00000020687 N
nfil3-5 Tetraodon nigroviridis ENSTNIG00000002293 N
ENSTNIG00000008333 Tetraodon nigroviridis ENSTNIG00000008333 I
nfil3-5 Takifugu rubripes ENSTRUG00000009543 N
ENSXMAG00000005127 Xiphophorus maculatus ENSXMAG00000005127 N
ENSXMAG00000019530 Xiphophorus maculatus ENSXMAG00000019530 N
Ogr13014 Ophisaurus gracilis Ogr13014 N
Pvit_11642 Pogona vitticeps Pvit_11642 N