PK03912.1 (Cannabis sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PK03912.1 T230074_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.818 0.842
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.818 0.842
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.681 0.807
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.681 0.807
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.643 0.649
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.643 0.649
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.643 0.649
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.643 0.632
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.630 0.632
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.630 0.632
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.630 0.632
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.630 0.632
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.618 0.632
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.618 0.632
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.610 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK03912.1 Homeodomain 33 89

Links

Other Homeodomain family TFs
Other Cannabis sativa TFs

472 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_191713 Agaricus bisporus AGABI2DRAFT_191713 N 0.000
BN946_scf184908.g73 Trametes cinnabarina BN946_scf184908.g73 N 0.000
BOTBODRAFT_26713 Botryobasidium botryosum BOTBODRAFT_26713 N 0.000
BOTBODRAFT_26714 Botryobasidium botryosum BOTBODRAFT_26714 N 0.000
BOTBODRAFT_72561 Botryobasidium botryosum BOTBODRAFT_72561 N 0.000
CC1G_00050 Coprinopsis cinerea CC1G_00050 N 0.000
CERSUDRAFT_111398 Ceriporiopsis subvermispora CERSUDRAFT_111398 N 0.000
CY34DRAFT_808328 Suillus luteus CY34DRAFT_808328 N 0.000
DICSQDRAFT_61352 Dichomitus squalens DICSQDRAFT_61352 N 0.000
e_gw1.4.2249.1 Heterobasidion annosum e_gw1.4.2249.1 N 0.000
fgenesh1_pg.C_scaffold_2000701 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000701 N 0.000
FIBRA_01455 Fibroporia radiculosa FIBRA_01455 N 0.000
FOMPIDRAFT_138732 Fomitopsis pinicola FOMPIDRAFT_138732 N 0.000
GALMADRAFT_23139 Galerina marginata GALMADRAFT_23139 N 0.000
GLOTRDRAFT_55344 Gloeophyllum trabeum GLOTRDRAFT_55344 N 0.000
JAAARDRAFT_28293 Jaapia argillacea JAAARDRAFT_28293 N 0.000
K443DRAFT_672537 Laccaria amethystina K443DRAFT_672537 N 0.000
M378DRAFT_8932 Amanita muscaria M378DRAFT_8932 N 0.000
M404DRAFT_92668 Pisolithus tinctorius M404DRAFT_92668 N 0.000
M407DRAFT_127438 Tulasnella calospora M407DRAFT_127438 N 0.000
M407DRAFT_91983 Tulasnella calospora M407DRAFT_91983 N 0.000
M408DRAFT_220715 Serendipita vermifera M408DRAFT_220715 N 0.000
M408DRAFT_326089 Serendipita vermifera M408DRAFT_326089 N 0.000
M413DRAFT_440930 Hebeloma cylindrosporum M413DRAFT_440930 N 0.000
Moror_1059 Moniliophthora roreri Moror_1059 N 0.000
PAXRUDRAFT_13206 Paxillus rubicundulus PAXRUDRAFT_13206 N 0.000
PHACADRAFT_249397 Phanerochaete carnosa PHACADRAFT_249397 N 0.000
PHLGIDRAFT_35648 Phlebiopsis gigantea PHLGIDRAFT_35648 N 0.000
PIIN_03370 Piriformospora indica PIIN_03370 N 0.000
PILCRDRAFT_811082 Piloderma croceum PILCRDRAFT_811082 N 0.000
PISMIDRAFT_670921 Pisolithus microcarpus PISMIDRAFT_670921 N 0.000
PLEOSDRAFT_1029614 Pleurotus ostreatus PLEOSDRAFT_1029614 N 0.000
SCHCODRAFT_47142 Schizophyllum commune SCHCODRAFT_47142 N 0.000
SCLCIDRAFT_1210054 Scleroderma citrinum SCLCIDRAFT_1210054 N 0.000
SERLA73DRAFT_177169 Serpula lacrymans SERLA73DRAFT_177169 N 0.000
V565_004480 Rhizoctonia solani V565_004480 I 0.000
V565_033130 Rhizoctonia solani V565_033130 N 0.000
V565_035960 Rhizoctonia solani V565_035960 N 0.000