XP_002162399.1 (Hydra magnipapillata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XP_002162399.1 T231070_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.847 0.860
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.847 0.860
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.847 0.860
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.847 0.860
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.847 0.860
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.847 0.860
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.847 0.860
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.847 0.860
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.847 0.860
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.847 0.860
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.847 0.842
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.847 0.825
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.847 0.825
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.847 0.825
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.847 0.825
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.847 0.825
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.841 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002162399.1 Homeodomain 409 465

Links

Other Homeodomain family TFs
Other Hydra magnipapillata TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN946_scf184844.g88 Trametes cinnabarina BN946_scf184844.g88 N
CC1G_07693 Coprinopsis cinerea CC1G_07693 N
CERSUDRAFT_88317 Ceriporiopsis subvermispora CERSUDRAFT_88317 N
CY34DRAFT_76552 Suillus luteus CY34DRAFT_76552 N
DICSQDRAFT_174574 Dichomitus squalens DICSQDRAFT_174574 N
estExt_fgenesh3_kg.C_120059 Heterobasidion annosum estExt_fgenesh3_kg.C_120059 N
fgenesh1_pg.C_scaffold_7000466 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000466 N
FIBRA_08064 Fibroporia radiculosa FIBRA_08064 N
FOMPIDRAFT_152036 Fomitopsis pinicola FOMPIDRAFT_152036 N
GALMADRAFT_242061 Galerina marginata GALMADRAFT_242061 N
HETIRDRAFT_411134 Heterobasidion irregulare HETIRDRAFT_411134 N
HYDPIDRAFT_115073 Hydnomerulius pinastri HYDPIDRAFT_115073 N
JAAARDRAFT_34133 Jaapia argillacea JAAARDRAFT_34133 N
M378DRAFT_170182 Amanita muscaria M378DRAFT_170182 N
M407DRAFT_110022 Tulasnella calospora M407DRAFT_110022 N
M413DRAFT_440277 Hebeloma cylindrosporum M413DRAFT_440277 N
PAXINDRAFT_22214 Paxillus involutus PAXINDRAFT_22214 N
PAXRUDRAFT_145041 Paxillus rubicundulus PAXRUDRAFT_145041 N
PHACADRAFT_251386 Phanerochaete carnosa PHACADRAFT_251386 N
PHSY_007120 Pseudozyma hubeiensis PHSY_007120 N
PILCRDRAFT_810626 Piloderma croceum PILCRDRAFT_810626 N
PISMIDRAFT_681565 Pisolithus microcarpus PISMIDRAFT_681565 N
PLEOSDRAFT_1110931 Pleurotus ostreatus PLEOSDRAFT_1110931 N
SCHCODRAFT_112222 Schizophyllum commune SCHCODRAFT_112222 N
SCHCODRAFT_232448 Schizophyllum commune SCHCODRAFT_232448 N
SERLA73DRAFT_175691 Serpula lacrymans SERLA73DRAFT_175691 N