Hba_05336 (Heterorhabditis bacteriophora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Hba_05336 T234122_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.783 0.511
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.783 0.511
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.783 0.511
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.722 0.400
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.722 0.400
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.722 0.400
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.722 0.400
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.722 0.400
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.722 0.400
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.722 0.400
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.722 0.400
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.722 0.400
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hba_05336 Homeodomain 75 119

Links

Other Homeodomain family TFs
Other Heterorhabditis bacteriophora TFs

1233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CANTEDRAFT_115344 Candida tenuis CANTEDRAFT_115344 N 0.000
estExt_fgenesh1_pg.C_chr_1.20168 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20168 N 0.000
G210_2469 Candida maltosa G210_2469 N 0.000
LELG_03400 Lodderomyces elongisporus LELG_03400 N 0.000
NCAS_0A07900 Naumovozyma castellii NCAS_0A07900 N 0.000
PGUG_04373 Candida guilliermondii PGUG_04373 N 0.000
PGUG_04373 Meyerozyma guilliermondii PGUG_04373 N 0.000
PICST_66620 Scheffersomyces stipitis PICST_66620 N 0.000
Scas_Contig660.12 Saccharomyces castellii Scas_Contig660.12 N 0.000
SPAPADRAFT_62218 Spathaspora passalidarum SPAPADRAFT_62218 N 0.000