MhA1_Contig1759.frz3.gene3 (Meloidogyne hapla)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MhA1_Contig1759.frz3.gene3 T235128_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.737 0.596
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.629 0.632
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.629 0.632
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.629 0.632
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.629 0.632
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.629 0.632
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.629 0.632
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.629 0.632
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.629 0.632
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.629 0.632
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.629 0.632
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.629 0.632
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.629 0.632
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.629 0.632
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.629 0.632
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.629 0.632
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.629 0.632
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.629 0.632
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.629 0.614
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.627 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MhA1_Contig1759.frz3.gene3 Homeodomain 218 277

Links

Other Homeodomain family TFs
Other Meloidogyne hapla TFs

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013408 Aedes aegypti AAEL013408 I
AALB004583 Anopheles albimanus AALB004583 I
Aan_R010721 Calypte anna Aan_R010721 I
AARA003510 Anopheles arabiensis AARA003510 I
AATE015987 Anopheles atroparvus AATE015987 I
ACEP13992 Atta cephalotes ACEP13992 I
ACHR007416 Anopheles christyi ACHR007416 I
ACOM036369 Anopheles coluzzii ACOM036369 I
ACUA011008 Anopheles culicifacies ACUA011008 I
ACYPI005878 Acyrthosiphon pisum ACYPI005878 N
ACYPI29974 Acyrthosiphon pisum ACYPI29974 N
ACYPI34776 Acyrthosiphon pisum ACYPI34776 N
ADAC006957 Anopheles darlingi ADAC006957 I
ADIR001685 Anopheles dirus ADIR001685 I
AEPI005273 Anopheles epiroticus AEPI005273 I
AFAF013455 Anopheles farauti AFAF013455 I
Afo_R011879 Aptenodytes forsteri Afo_R011879 I
AFUN005053 Anopheles funestus AFUN005053 I
AGAP004905 Anopheles gambiae AGAP004905 I
Alligator_sinensis_CCG021031.1 Alligator sinensis Alligator_sinensis_CCG021031.1 I
AMAM018568 Anopheles maculatus AMAM018568 I
AMEC000569 Anopheles melas AMEC000569 I
AMIN011402 Anopheles minimus AMIN011402 I
AQUA000322 Anopheles quadriannulatus AQUA000322 I
ASIS014192 Anopheles sinensis ASIS014192 I
ASTEI10643 Anopheles stephensi ASTEI10643 I
BGIBMGA002019 Bombyx mori BGIBMGA002019 I
BGLB009094 Biomphalaria glabrata BGLB009094 I
CapteG228571 Capitella teleta CapteG228571 I
Cflo_07037--XP_395757.2_APIME Camponotus floridanus Cflo_07037--XP_395757.2_APIME I
CLEC001236 Cimex lectularius CLEC001236 I
Cmyd_10004045 Chelonia mydas Cmyd_10004045 I
CPIJ007045 Culex quinquefasciatus CPIJ007045 I
CpipJ_CPIJ007045 Culex pipiens CpipJ_CPIJ007045 I
DEAF1 Anolis carolinensis ENSACAG00000015102 I
ENSAMEG00000010672 Ailuropoda melanoleuca ENSAMEG00000010672 I
ENSAPLG00000011215 Anas platyrhynchos ENSAPLG00000011215 I
DEAF1 Canis familiaris ENSCAFG00000006569 I
DEAF1 Callithrix jacchus ENSCJAG00000011996 I
DEAF1 Cavia porcellus ENSCPOG00000006073 I
ENSCSAG00000010763 Chlorocebus sabaeus ENSCSAG00000010763 I
DEAF1 Dasypus novemcinctus ENSDNOG00000000274 I
Deaf1 Dipodomys ordii ENSDORG00000015737 I
DEAF1 Equus caballus ENSECAG00000010151 I
ENSFALG00000010923 Ficedula albicollis ENSFALG00000010923 I
DEAF1 Felis catus ENSFCAG00000007591 I
DEAF1 Homo sapiens ENSG00000177030 I
ENSGALG00000005089 Gallus gallus ENSGALG00000005089 I
DEAF1 Gorilla gorilla ENSGGOG00000014020 I
DEAF1 Loxodonta africana ENSLAFG00000023242 I
ENSLOCG00000002360 Lepisosteus oculatus ENSLOCG00000002360 I
DEAF1 Meleagris gallopavo ENSMGAG00000003765 I
DEAF1 Myotis lucifugus ENSMLUG00000026576 I
DEAF1 Macaca mulatta ENSMMUG00000002660 I
ENSMPUG00000008992 Mustela putorius furo ENSMPUG00000008992 I
Deaf1 Mus musculus ENSMUSG00000058886 I
ENSNLEG00000008479 Nomascus leucogenys ENSNLEG00000008479 I
ENSOARG00000006285 Ovis aries ENSOARG00000006285 I
DEAF1 Otolemur garnettii ENSOGAG00000006434 I
ENSOPRG00000002240 Ochotona princeps ENSOPRG00000002240 I
ENSP00000371846 Macaca fascicularis ENSP00000371846 I
ENSP00000371846-D1 Bos grunniens ENSP00000371846-D1 I
ENSPANG00000008597 Papio anubis ENSPANG00000008597 I
ENSPMAG00000004264 Petromyzon marinus ENSPMAG00000004264 I
ENSPSIG00000016545 Pelodiscus sinensis ENSPSIG00000016545 I
DEAF1 Pan troglodytes ENSPTRG00000003129 D
DEAF1 Pteropus vampyrus ENSPVAG00000006883 I
Deaf1 Rattus norvegicus ENSRNOG00000017960 I
DEAF1 Sus scrofa ENSSSCG00000012850 I
ENSSTOG00000004165 Ictidomys tridecemlineatus ENSSTOG00000004165 I
DEAF1 Taeniopygia guttata ENSTGUG00000007185 I
DEAF1 Tursiops truncatus ENSTTRG00000015418 I
Deaf1 Drosophila melanogaster FBgn0013799 D
GA21169 Drosophila pseudoobscura FBgn0081157 I
GF23595 Drosophila ananassae FBgn0100589 I
GG16060 Drosophila erecta FBgn0108295 I
GH14660 Drosophila grimshawi FBgn0122136 I
GI11644 Drosophila mojavensis FBgn0134404 I
GM19656 Drosophila sechellia FBgn0174556 I
GD14830 Drosophila simulans FBgn0186503 I
GJ11325 Drosophila virilis FBgn0198585 I
GK16969 Drosophila willistoni FBgn0218968 I
GE19626 Drosophila yakuba FBgn0236964 I
GE23216 Drosophila yakuba FBgn0240415 I
fgenesh2_pg.scaffold_59000067 Branchiostoma floridae fgenesh2_pg.scaffold_59000067 I
fgenesh2_pg.scaffold_59000072 Branchiostoma floridae fgenesh2_pg.scaffold_59000072 I
GB41654 Apis mellifera GB41654 I
Gfo_R011899 Geospiza fortis Gfo_R011899 I
HHAL006904-PA Halyomorpha halys HHAL006904-PA I
HMEL013517 Heliconius melpomene HMEL013517 I
Hsal_03559--XP_395757.2_APIME Harpegnathos saltator Hsal_03559--XP_395757.2_APIME I
ISCW003915 Ixodes scapularis ISCW003915 I
KGM_18605 Danaus plexippus KGM_18605 I
L798_01684 Zootermopsis nevadensis L798_01684 I
LCUP007674 Lucilia cuprina LCUP007674 I
LDEC013410 Leptinotarsa decemlineata LDEC013410 I
LLOJ006782 Lutzomyia longipalpis LLOJ006782 I
MCINX013640 Melitaea cinxia MCINX013640 I
MDOA003373 Musca domestica MDOA003373 I
Myotis_brandtii_DEAF1_10008461 Myotis brandtii Myotis_brandtii_DEAF1_10008461 I
NV18168 Nasonia vitripennis NV18168 I
Ocbimv22013386m.g Octopus bimaculoides Ocbimv22013386m.g I
Ogr05554 Ophisaurus gracilis Ogr05554 I
PHUM581340 Pediculus humanus PHUM581340 I
PPAI007052 Phlebotomus papatasi PPAI007052 I
Pvit_08245 Pogona vitticeps Pvit_08245 I
RPRC001228 Rhodnius prolixus RPRC001228 I
Sakowv30032927m.g Saccoglossus kowalevskii Sakowv30032927m.g I
SINV20880 Solenopsis invicta SINV20880 I
SMAR003119 Strigamia maritima SMAR003119 I
SPU_014381 Strongylocentrotus purpuratus SPU_014381 N
TC000085 Tribolium castaneum TC000085 I
YQE_06816 Dendroctonus ponderosae YQE_06816 I