nRc.2.0.1.g00143 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g00143 T235503_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.668 0.333
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.668 0.333
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.668 0.333
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.668 0.333
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.668 0.333
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.668 0.333
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.668 0.333
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.668 0.333
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.668 0.333
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t00143-RA Homeodomain 151 198

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

1007 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017891 Ailuropoda melanoleuca ENSAMEG00000017891 I 0.000
NEUROG1 Bos taurus ENSBTAG00000003331 I 0.000
NEUROG1 Canis familiaris ENSCAFG00000001083 I 0.000
NEUROG1 Callithrix jacchus ENSCJAG00000005899 I 0.000
NEUROG1 Cavia porcellus ENSCPOG00000020630 I 0.000
ENSCSAG00000000502 Chlorocebus sabaeus ENSCSAG00000000502 I 0.000
NEUROG1 Dasypus novemcinctus ENSDNOG00000018026 I 0.000
NEUROG1 Homo sapiens ENSG00000181965 D 0.000
NEUROG1 Gorilla gorilla ENSGGOG00000002841 I 0.000
ENSLACG00000010664 Latimeria chalumnae ENSLACG00000010664 I 0.000
NEUROG1 Loxodonta africana ENSLAFG00000010799 I 0.000
NEUROG1 Myotis lucifugus ENSMLUG00000004571 I 0.000
NEUROG1 Macaca mulatta ENSMMUG00000004770 I 0.000
ENSMPUG00000019792 Mustela putorius furo ENSMPUG00000019792 I 0.000
Neurog1 Mus musculus ENSMUSG00000048904 D 0.000
ENSNLEG00000018460 Nomascus leucogenys ENSNLEG00000018460 I 0.000
NEUROG1 Oryctolagus cuniculus ENSOCUG00000004405 I 0.000
NEUROG1 Otolemur garnettii ENSOGAG00000033152 I 0.000
ENSP00000317580 Macaca fascicularis ENSP00000317580 I 0.000
ENSPANG00000004163 Papio anubis ENSPANG00000004163 I 0.000
ENSPPYG00000015801 Pongo abelii ENSPPYG00000015801 I 0.000
NEUROG1 Pan troglodytes ENSPTRG00000017258 I 0.000
Neurog1 Rattus norvegicus ENSRNOG00000022405 I 0.000
NEUROG1 Sus scrofa ENSSSCG00000014309 I 0.000
ENSSTOG00000022759 Ictidomys tridecemlineatus ENSSTOG00000022759 I 0.000
Myotis_brandtii_Cxcl14_10032619 Myotis brandtii Myotis_brandtii_Cxcl14_10032619 I 0.000