SVE_0935100 (Strongyloides venezuelensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVE_0935100 T236565_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.805 0.585
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.805 0.585
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.805 0.585
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.805 0.585
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.805 0.585
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.792 0.585
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.792 0.585
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.792 0.585
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.792 0.585
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.792 0.585
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.792 0.566
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.792 0.566
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.792 0.566
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.792 0.566
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.679 0.585
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.679 0.585
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.679 0.585
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.679 0.585
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.679 0.585
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.679 0.585
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.679 0.585
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.679 0.585
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.679 0.566
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.679 0.566
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.679 0.566
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.679 0.566
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.679 0.566
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.679 0.566
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.679 0.566
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.679 0.566
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.679 0.566
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.679 0.566
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.679 0.566
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.679 0.566
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.679 0.566
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.679 0.566
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.679 0.566
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.679 0.566
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.679 0.566
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.679 0.566
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.619 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVE_0935100.1 Homeodomain 142 194

Links

Other Homeodomain family TFs
Other Strongyloides venezuelensis TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015364 Calypte anna Aan_R015364 I
Afo_R001760 Aptenodytes forsteri Afo_R001760 I
Alligator_sinensis_CCG020380.1 Alligator sinensis Alligator_sinensis_CCG020380.1 I
Brh_R011720 Buceros rhinoceros Brh_R011720 I
ENSACAG00000001604 Anolis carolinensis ENSACAG00000001604 I
ENSAMEG00000019874 Ailuropoda melanoleuca ENSAMEG00000019874 I
ENSAPLG00000001852 Anas platyrhynchos ENSAPLG00000001852 I
MSGN1 Bos taurus ENSBTAG00000039113 I
MSGN1 Canis familiaris ENSCAFG00000003750 I
MSGN1 Callithrix jacchus ENSCJAG00000032633 I
ENSCSAG00000000377 Chlorocebus sabaeus ENSCSAG00000000377 I
MSGN1 Dasypus novemcinctus ENSDNOG00000013441 I
Msgn1 Dipodomys ordii ENSDORG00000003509 I
MSGN1 Equus caballus ENSECAG00000002724 I
MSGN1 Erinaceus europaeus ENSEEUG00000015222 I
ENSFALG00000001820 Ficedula albicollis ENSFALG00000001820 I
MSGN1 Felis catus ENSFCAG00000013583 I
MSGN1 Homo sapiens ENSG00000151379 D
MSGN1 Gallus gallus ENSGALG00000016469 I
MSGN1 Gorilla gorilla ENSGGOG00000012168 I
MSGN1 Loxodonta africana ENSLAFG00000015319 I
ENSMEUG00000006206 Macropus eugenii ENSMEUG00000006206 I
MSGN1 Meleagris gallopavo ENSMGAG00000016374 I
ENSMICG00000010842 Microcebus murinus ENSMICG00000010842 I
MSGN1 Myotis lucifugus ENSMLUG00000007599 I
MSGN1 Macaca mulatta ENSMMUG00000008141 I
MSGN1 Monodelphis domestica ENSMODG00000004056 I
ENSMPUG00000019484 Mustela putorius furo ENSMPUG00000019484 I
Msgn1 Mus musculus ENSMUSG00000047002 D
ENSNLEG00000018810 Nomascus leucogenys ENSNLEG00000018810 I
MSGN1 Ornithorhynchus anatinus ENSOANG00000002188 I
ENSOARG00000016765 Ovis aries ENSOARG00000016765 I
MSGN1 Oryctolagus cuniculus ENSOCUG00000000309 I
MSGN1 Otolemur garnettii ENSOGAG00000012569 I
ENSP00000281047 Macaca fascicularis ENSP00000281047 I
ENSP00000281047-D1 Bos grunniens ENSP00000281047-D1 I
ENSPANG00000004064 Papio anubis ENSPANG00000004064 I
MSGN1 Procavia capensis ENSPCAG00000015116 I
ENSPPYG00000012628 Pongo abelii ENSPPYG00000012628 I
MSGN1 Pan troglodytes ENSPTRG00000011679 I
MSGN1 Pteropus vampyrus ENSPVAG00000015666 I
Msgn1 Rattus norvegicus ENSRNOG00000028518 I
MSGN1 Sorex araneus ENSSARG00000007866 I
MSGN1 Sus scrofa ENSSSCG00000026538 I
ENSSTOG00000013981 Ictidomys tridecemlineatus ENSSTOG00000013981 I
MSGN1 Tupaia belangeri ENSTBEG00000001387 I
MSGN1 Taeniopygia guttata ENSTGUG00000013122 I
ENSTSYG00000003733 Tarsius syrichta ENSTSYG00000003733 I
MSGN1 Tursiops truncatus ENSTTRG00000015917 I
Gfo_R015241 Geospiza fortis Gfo_R015241 I
Myotis_brandtii_MSGN1_10020188 Myotis brandtii Myotis_brandtii_MSGN1_10020188 I
Ogr03919 Ophisaurus gracilis Ogr03919 I
Pvit_07087 Pogona vitticeps Pvit_07087 I
Tal_R008386 Tyto alba Tal_R008386 I