SVUK_0001967701 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0001967701 T236633_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.811 0.587
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.811 0.587
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.811 0.587
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.811 0.587
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.811 0.587
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.811 0.587
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.811 0.587
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.811 0.587
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.348
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.348
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0001967701-mRNA-1 Homeodomain 2 47

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

1239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PMAA_095820 Talaromyces marneffei PMAA_095820 N 0.000
PMAA_095820 Penicillium marneffei PMAA_095820 N 0.000
TSTA_000600 Talaromyces stipitatus TSTA_000600 N 0.000
TSTA_003830 Talaromyces stipitatus TSTA_003830 N 0.000
TSTA_008370 Talaromyces stipitatus TSTA_008370 N 0.000
TSTA_008380 Talaromyces stipitatus TSTA_008380 N 0.000
TSTA_009130 Talaromyces stipitatus TSTA_009130 N 0.000
TSTA_009440 Talaromyces stipitatus TSTA_009440 N 0.000
TSTA_009900 Talaromyces stipitatus TSTA_009900 N 0.000
TSTA_013450 Talaromyces stipitatus TSTA_013450 N 0.000
TSTA_020700 Talaromyces stipitatus TSTA_020700 N 0.000
TSTA_022990 Talaromyces stipitatus TSTA_022990 N 0.000
TSTA_024630 Talaromyces stipitatus TSTA_024630 N 0.000
TSTA_025810 Talaromyces stipitatus TSTA_025810 N 0.000
TSTA_029420 Talaromyces stipitatus TSTA_029420 N 0.000
TSTA_035660 Talaromyces stipitatus TSTA_035660 N 0.000
TSTA_035730 Talaromyces stipitatus TSTA_035730 N 0.000
TSTA_050400 Talaromyces stipitatus TSTA_050400 N 0.000
TSTA_050560 Talaromyces stipitatus TSTA_050560 N 0.000
TSTA_052640 Talaromyces stipitatus TSTA_052640 N 0.000
TSTA_055970 Talaromyces stipitatus TSTA_055970 N 0.000
TSTA_059810 Talaromyces stipitatus TSTA_059810 N 0.000
TSTA_069180 Talaromyces stipitatus TSTA_069180 N 0.000
TSTA_080510 Talaromyces stipitatus TSTA_080510 N 0.000
TSTA_080940 Talaromyces stipitatus TSTA_080940 N 0.000
TSTA_086330 Talaromyces stipitatus TSTA_086330 N 0.000
TSTA_093940 Talaromyces stipitatus TSTA_093940 N 0.000
TSTA_096630 Talaromyces stipitatus TSTA_096630 N 0.000
TSTA_097820 Talaromyces stipitatus TSTA_097820 N 0.000
TSTA_097920 Talaromyces stipitatus TSTA_097920 N 0.000
TSTA_098060 Talaromyces stipitatus TSTA_098060 N 0.000
TSTA_098800 Talaromyces stipitatus TSTA_098800 N 0.000
TSTA_103240 Talaromyces stipitatus TSTA_103240 N 0.000
TSTA_106120 Talaromyces stipitatus TSTA_106120 N 0.000
TSTA_107220 Talaromyces stipitatus TSTA_107220 N 0.000
TSTA_109860 Talaromyces stipitatus TSTA_109860 N 0.000
TSTA_112350 Talaromyces stipitatus TSTA_112350 N 0.000
TSTA_112760 Talaromyces stipitatus TSTA_112760 N 0.000
TSTA_124040 Talaromyces stipitatus TSTA_124040 N 0.000
TSTA_125380 Talaromyces stipitatus TSTA_125380 N 0.000
TSTA_125400 Talaromyces stipitatus TSTA_125400 N 0.000