CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TTRE_0000025101 *(Trichuris trichiura)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	TTRE_0000025101	T237156_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.801	0.702
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.801	0.702
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.801	0.702
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.801	0.702
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.774	0.702
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.774	0.702
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.774	0.702
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.774	0.702
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.774	0.702
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.774	0.702
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.774	0.702
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.774	0.702
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.774	0.702
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.774	0.702
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.774	0.684
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.774	0.684
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.774	0.684
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.774	0.684
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.774	0.684
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.774	0.684
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.774	0.684
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.774	0.684
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.774	0.684
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.774	0.684
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.770	0.667
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.770	0.667
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.770	0.667
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.761	0.649
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.761	0.649
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.761	0.649
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.761	0.649
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.761	0.649
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.761	0.649
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.761	0.649
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.761	0.649
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.761	0.649
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.761	0.649
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.761	0.649
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.753	0.667
Nkx2-6 M00496_2.00	Mus musculus	HYAAGTRBNN	NNVYACTTRD	PBM Berger et al.(2008) Nkx2-6_3437	0.616	0.509
NKX2-5 M00323_2.00	Homo sapiens	NWYAAGTGSNN	NNSCACTTRWN	PBM Barrera et al.(2016) NKX2-5_REF	0.614	0.509
Nkx2-5 M00404_2.00	Mus musculus	NNNRAGDRBN	NVYHCTYNNN	PBM Berger et al.(2008) Nkx2-5_3436	0.614	0.509
NKX2-5 M05346_2.00	Homo sapiens	BHYAAGTGBN	NVCACTTRDV	SELEX Yin et al.(2017) NKX2-5_FL_HT-SELEX	0.614	0.509
Nkx2-5 M02686_2.00	Mus musculus	WTAAKWK	MWMTTAW	SELEX Mathelier et al.(2014) MA0063.1	0.614	0.509
Nkx2-5 M08136_2.00	Mus musculus	SYTGAGWGSYH	DRSCWCTCARS	ChIP-seq Mathelier et al.(2014) MA0503.1	0.614	0.509
NKX2-5 M09163_2.00	Homo sapiens	BKRAGWGV	BCWCTYMV	Misc Kulakovskiy et al.(2013) NKX25_HUMAN.H11MO.0.B	0.614	0.509
Nkx2-5 M09177_2.00	Mus musculus	NBYBRAGTGS	SCACTYVRVN	Misc Kulakovskiy et al.(2013) NKX25_MOUSE.H11MO.0.A	0.614	0.509
Nkx2-5 M09567_2.00	Mus musculus	HBRAGWGBNN	NNVCWCTYVD	Misc Heinz et al.(2010) HL1-Nkx2.5.biotin_GSE21529	0.614	0.509
NKX2-5 M10742_2.00	Homo sapiens	TYAAGTG	CACTTRA	Transfac Matys et al.(2006) V$NKX25_01	0.614	0.509
NKX2-5 M10743_2.00	Homo sapiens	CWTAATTV	BAATTAWG	Transfac Matys et al.(2006) V$NKX25_02	0.614	0.509
NKX2-5 M10744_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX25_Q5	0.614	0.509
NKX2-5 M10745_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX25_Q6	0.614	0.509
NKX2-5 M05347_2.00	Homo sapiens	BTYAAGTGGN	NCCACTTRAV	SELEX Yin et al.(2017) NKX2-5_FL_Methyl-HT-SELEX_1	0.614	0.509
NKX2-5 M05348_2.00	Homo sapiens	BTYAACGAB	VTCGTTRAV	SELEX Yin et al.(2017) NKX2-5_FL_Methyl-HT-SELEX_2	0.614	0.509
Nkx2-3 M00497_2.00	Mus musculus	NNRAGDRNN	NNYHCTYNN	PBM Berger et al.(2008) Nkx2-3_3435	0.614	0.491
NKX2-3 M05042_2.00	Homo sapiens	NNBAAGTGBN	NVCACTTVNN	SELEX Yin et al.(2017) NKX2-3_eDBD_HT-SELEX	0.614	0.491
NKX2-3 M05045_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_FL_HT-SELEX	0.614	0.491
NKX2-5 M00322_2.00	Homo sapiens	NNNRNNN	NNNYNNN	PBM Barrera et al.(2016) NKX2-5_R190C	0.614	0.491
NKX2-5 M00324_2.00	Homo sapiens	NHNNNNN	NNNNNDN	PBM Barrera et al.(2016) NKX2-5_T178M	0.614	0.491
NKX2-3 M05043_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_eDBD_Methyl-HT-SELEX_1	0.614	0.491
NKX2-3 M05044_2.00	Homo sapiens	SDYAACGHB	VDCGTTRHS	SELEX Yin et al.(2017) NKX2-3_eDBD_Methyl-HT-SELEX_2	0.614	0.491
NKX2-3 M05046_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_FL_Methyl-HT-SELEX_1	0.614	0.491
NKX2-3 M05047_2.00	Homo sapiens	SWYAACSHB	VDSGTTRWS	SELEX Yin et al.(2017) NKX2-3_FL_Methyl-HT-SELEX_2	0.614	0.491
NKX2-5 M00321_2.00	Homo sapiens	HNAAGTRBNN	NNVYACTTND	PBM Barrera et al.(2016) NKX2-5_R161P	0.609	0.491
pal-1 M02183_2.00	Caenorhabditis elegans	GYAATWAA	TTWATTRC	PBM Weirauch et al.(2014) pTH6016	0.603	0.684
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
TTRE_0000025101	Homeodomain	216	272	EKYRVVYSTYQRLELEKEFCYNRFITVERRTQLAHMLGLTSRQIKIWFQNRRAKEKK

Links
Other Homeodomain family TFs
Other *Trichuris trichiura* TFs

506 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

TTRE_0000025101 (Trichuris trichiura) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

506 Related TFs

TTRE_0000025101 **(Trichuris trichiura)
Homeodomain**