CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ENSAMEG00000004648
(
Ailuropoda melanoleuca
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSAMEG00000004648
T237261_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.945
0.945
PAX4
M00351_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.945
0.945
PAX4
M03295_2.00
Homo sapiens
HKAATTAR
YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.945
0.945
PAX4
M03296_2.00
Homo sapiens
YKAATTAV
BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.945
0.945
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG
CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.945
0.945
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV
BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.945
0.945
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN
NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.945
0.945
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV
BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.945
0.945
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN
NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.945
0.945
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR
YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.945
0.945
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN
NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.945
0.945
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV
BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.945
0.945
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB
VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.945
0.945
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB
VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.945
0.945
PAX4
M10815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.945
0.945
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN
NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.945
0.945
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN
NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.945
0.945
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN
NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.945
0.945
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN
NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.945
0.945
PAX4
M00347_2.00
Homo sapiens
NNNATND
HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.940
0.940
PAX4
M00348_2.00
Homo sapiens
NNDATTAN
NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.940
0.940
PAX4
M00349_2.00
Homo sapiens
NNNATTANN
NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.940
0.940
Pax4
M00542_2.00
Mus musculus
NNNATTAN
NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.934
0.934
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMEP00000004910
Paired box
5
129
GISSVNQLGGLFVNGRPLPLDTRQQIVRLAVGGMRPCDISRSLKVSNGCVSKILARYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSAMEP00000004910
Homeodomain
171
227
HRNRTIFSPGQAEALEKEFQRGQYPDSVARGKLAAATSLPEDTVRVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Ailuropoda melanoleuca
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy