cassava18944.valid.m1 (Manihot esculenta)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 cassava18944.valid.m1 T242719_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.526 0.874
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.526 0.874
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.471 0.828
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.471 0.828
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.446 0.782
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.420 0.678
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.420 0.678
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.385 0.632
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.381 0.621
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.381 0.621
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.381 0.621
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.381 0.609
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.381 0.609
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.377 0.655
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.377 0.655
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.374 0.667
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.374 0.667
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.352 0.644
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.352 0.644
HSF1
M03329_2.00 		Homo sapiens
GAANVTTCBVGAA
TTCBVGAABNTTC		 SELEX
Jolma et al.(2013)
HSF1_1 		0.319 0.552
HSF1
M03330_2.00 		Homo sapiens
GAANRTTCBAGAA
TTCTVGAAYNTTC		 SELEX
Jolma et al.(2013)
HSF1_2 		0.319 0.552
HSF1
M05523_2.00 		Homo sapiens
VGAABVTTCBVGAWN
NWTCBVGAABVTTCB		 SELEX
Yin et al.(2017)
HSF1_eDBD_HT-SELEX 		0.319 0.552
HSF1
M05525_2.00 		Homo sapiens
VGAANRTTCKVGAAN
NTTCBMGAAYNTTCB		 SELEX
Yin et al.(2017)
HSF1_FL_HT-SELEX 		0.319 0.552
HSF1
M07977_2.00 		Homo sapiens
GDCSYGGGTTCRADYCCC
GGGRHTYGAACCCRSGHC		 ChIP-seq
Gerstein et al.(2012)
HepG2_HSF1_Stanford 		0.319 0.552
HSF1
M09230_2.00 		Homo sapiens
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_HUMAN.H11MO.0.A 		0.319 0.552
Hsf1
M09232_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Kulakovskiy et al.(2013)
HSF1_MOUSE.H11MO.0.A 		0.319 0.552
HSF1
M09592_2.00 		Homo sapiens
NNBBCYRGAANNTTCYRGVV
BBCYRGAANNTTCYRGVVNN		 Misc
Heinz et al.(2010)
HepG2-HSF1_GSE31477 		0.319 0.552
Hsf1
M09593_2.00 		Mus musculus
NRGAANNTTCYRGAA
TTCYRGAANNTTCYN		 Misc
Heinz et al.(2010)
Striatum-HSF1_GSE38000 		0.319 0.552
HSF1
M10863_2.00 		Homo sapiens
NGAAHNTTCY
RGAANDTTCN		 Transfac
Matys et al.(2006)
V$HSF1_01 		0.319 0.552
HSF1
M10864_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5_01 		0.319 0.552
HSF1
M10865_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q5 		0.319 0.552
HSF1
M10866_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6_01 		0.319 0.552
HSF1
M10867_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF1_Q6 		0.319 0.552
HSF1
M10868_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF_Q6 		0.319 0.552
HSF1
M05524_2.00 		Homo sapiens
RGAANRTTCYRGAWN
NWTCYRGAAYNTTCY		 SELEX
Yin et al.(2017)
HSF1_eDBD_Methyl-HT-SELEX 		0.319 0.552
HSF1
M05526_2.00 		Homo sapiens
RGAANVTTCYRGAWN
NWTCYRGAABNTTCY		 SELEX
Yin et al.(2017)
HSF1_FL_Methyl-HT-SELEX 		0.319 0.552
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18944.valid.m1 HSF 25 115

Links

Other HSF family TFs
Other Manihot esculenta TFs

1433 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006200 Calypte anna Aan_R006200 I
Alligator_sinensis_CCG005947.1 Alligator sinensis Alligator_sinensis_CCG005947.1 I
Cmyd_10007085 Chelonia mydas Cmyd_10007085 I
MLX Anolis carolinensis ENSACAG00000013679 I
ENSAMEG00000006549 Ailuropoda melanoleuca ENSAMEG00000006549 I
ENSAPLG00000003549 Anas platyrhynchos ENSAPLG00000003549 I
MLX Bos taurus ENSBTAG00000046670 I
MLX Canis familiaris ENSCAFG00000029102 I
ENSCHOG00000003363 Choloepus hoffmanni ENSCHOG00000003363 I
MLX Callithrix jacchus ENSCJAG00000005011 I
ENSCSAG00000003241 Chlorocebus sabaeus ENSCSAG00000003241 I
MLX Dasypus novemcinctus ENSDNOG00000045315 I
Mlx Dipodomys ordii ENSDORG00000006540 I
MLX Equus caballus ENSECAG00000023980 I
ENSEEUG00000003268 Erinaceus europaeus ENSEEUG00000003268 I
MLX Echinops telfairi ENSETEG00000017247 I
MLX Felis catus ENSFCAG00000011667 I
MLX Homo sapiens ENSG00000108788 D
Mlx Gallus gallus ENSGALG00000003199 I
MLX Gorilla gorilla ENSGGOG00000010869 I
ENSLACG00000007918 Latimeria chalumnae ENSLACG00000007918 I
MLX Loxodonta africana ENSLAFG00000000328 I
ENSMEUG00000000185 Macropus eugenii ENSMEUG00000000185 I
MLX Microcebus murinus ENSMICG00000010258 I
MLX Myotis lucifugus ENSMLUG00000016670 I
MLX Macaca mulatta ENSMMUG00000009887 I
MLX Monodelphis domestica ENSMODG00000014918 D
ENSMPUG00000010285 Mustela putorius furo ENSMPUG00000010285 I
Mlx Mus musculus ENSMUSG00000017801 D
ENSOARG00000002343 Ovis aries ENSOARG00000002343 I
MLX Oryctolagus cuniculus ENSOCUG00000015210 I
MLX Otolemur garnettii ENSOGAG00000009867 I
MLX Ochotona princeps ENSOPRG00000012322 I
ENSP00000246912 Macaca fascicularis ENSP00000246912 I
ENSP00000246912-D1 Bos grunniens ENSP00000246912-D1 I
ENSPANG00000021416 Papio anubis ENSPANG00000021416 I
MLX Procavia capensis ENSPCAG00000014225 I
ENSPPYG00000008387 Pongo abelii ENSPPYG00000008387 I
ENSPSIG00000015412 Pelodiscus sinensis ENSPSIG00000015412 I
MLX Pan troglodytes ENSPTRG00000009208 I
MLX Pteropus vampyrus ENSPVAG00000016556 I
Mlx Rattus norvegicus ENSRNOG00000019983 I
MLX Sorex araneus ENSSARG00000014166 I
ENSSHAG00000014167 Sarcophilus harrisii ENSSHAG00000014167 I
MLX Sus scrofa ENSSSCG00000017397 I
ENSSTOG00000003660 Ictidomys tridecemlineatus ENSSTOG00000003660 I
MLX Tupaia belangeri ENSTBEG00000002111 I
ENSTSYG00000007534 Tarsius syrichta ENSTSYG00000007534 I
MLX Tursiops truncatus ENSTTRG00000016407 I
Myotis_brandtii_MLX_10015321 Myotis brandtii Myotis_brandtii_MLX_10015321 I
Ogr17012 Ophisaurus gracilis Ogr17012 I
Pvit_17633 Pogona vitticeps Pvit_17633 I