Cagra.0154s0031 (Capsella grandiflora)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Cagra.0154s0031 T243011_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.440 0.724
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.439 0.690
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.439 0.690
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.439 0.690
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.431 0.644
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.429 0.701
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.429 0.701
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.424 0.701
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.424 0.701
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.419 0.644
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.419 0.644
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.417 0.644
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.417 0.644
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.412 0.690
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.412 0.690
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.396 0.632
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.396 0.632
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.389 0.644
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.389 0.644
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0154s0031.1.p HSF 57 147

Links

Other HSF family TFs
Other Capsella grandiflora TFs

1459 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL006314 Aedes aegypti AAEL006314 N
AALB007163 Anopheles albimanus AALB007163 N
AATE006965 Anopheles atroparvus AATE006965 N
ACOM035653 Anopheles coluzzii ACOM035653 N
ADAC008469 Anopheles darlingi ADAC008469 N
ADIR002735 Anopheles dirus ADIR002735 N
AEPI010100 Anopheles epiroticus AEPI010100 N
AFUN003771 Anopheles funestus AFUN003771 N
AGAP003186 Anopheles gambiae AGAP003186 N
AMAM014959 Anopheles maculatus AMAM014959 N
AMEC009565 Anopheles melas AMEC009565 N
AMEM012821 Anopheles merus AMEM012821 N
AMIN002488 Anopheles minimus AMIN002488 N
AQUA008105 Anopheles quadriannulatus AQUA008105 N
ASIS010868 Anopheles sinensis ASIS010868 N
ASTEI07927 Anopheles stephensi ASTEI07927 N
CPIJ013198 Culex quinquefasciatus CPIJ013198 N
CpipJ_CPIJ013198 Culex pipiens CpipJ_CPIJ013198 N