gene30146-v1.0-hybrid (Fragaria vesca)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 gene30146-v1.0-hybrid T243164_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.452 0.667
HSFB4
M06936_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFB4_col_a 		0.437 0.678
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.436 0.690
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.436 0.690
HSFC1
M00868_2.00 		Arabidopsis thaliana
NDTCBNNN
NNNVGAHN		 PBM
Franco-Zorrilla et al.(2014)
HSFC1 		0.434 0.667
HSFC1
M06943_2.00 		Arabidopsis thaliana
GAASNTTCTAG
CTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFC1_col_a 		0.434 0.667
HSFC1
M06944_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAANVW
WBNTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFC1_colamp_a 		0.434 0.667
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.429 0.678
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.429 0.678
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.422 0.690
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.422 0.690
HSFB2B
M06945_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_col_a 		0.418 0.632
HSFB2B
M06946_2.00 		Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSF7_colamp_a 		0.418 0.632
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.417 0.621
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.417 0.621
HSFA6A
M06950_2.00 		Arabidopsis thaliana
GAASNTTCTAGAANNW
WNNTTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_col_a 		0.405 0.667
HSFA6A
M06951_2.00 		Arabidopsis thaliana
GAASNTTCTAGAA
TTCTAGAANSTTC		 Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a 		0.405 0.667
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.397 0.621
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.397 0.621
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30146.1-v1.0-hybrid HSF 32 127

Links

Other HSF family TFs
Other Fragaria vesca TFs

1487 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R001188 Aptenodytes forsteri Afo_R001188 I
Alligator_sinensis_CCG001816.1 Alligator sinensis Alligator_sinensis_CCG001816.1 I
Alligator_sinensis_CCG003243.1 Alligator sinensis Alligator_sinensis_CCG003243.1 I
Brh_R004937 Buceros rhinoceros Brh_R004937 I
Cmyd_10002091 Chelonia mydas Cmyd_10002091 I
Cmyd_10005057 Chelonia mydas Cmyd_10005057 I
ENSAMEG00000011947 Ailuropoda melanoleuca ENSAMEG00000011947 I
ENSAMXG00000011038 Astyanax mexicanus ENSAMXG00000011038 I
ENSAMXG00000012038 Astyanax mexicanus ENSAMXG00000012038 I
CREB3L4 Bos taurus ENSBTAG00000014692 I
CREB3L4 Canis familiaris ENSCAFG00000017395 I
CREB3L4 Choloepus hoffmanni ENSCHOG00000002522 I
CREB3L4 Callithrix jacchus ENSCJAG00000009978 I
ENSCPOG00000012896 Cavia porcellus ENSCPOG00000012896 I
ENSCSAG00000001896 Chlorocebus sabaeus ENSCSAG00000001896 I
creb3l3a Danio rerio ENSDARG00000056226 I
creb3l3b Danio rerio ENSDARG00000090903 I
CREB3L4 Dasypus novemcinctus ENSDNOG00000042769 I
Creb3l4 Dipodomys ordii ENSDORG00000011769 I
CREB3L4 Equus caballus ENSECAG00000017552 I
CREB3L4 Echinops telfairi ENSETEG00000008252 I
ENSFALG00000000900 Ficedula albicollis ENSFALG00000000900 I
CREB3L4 Felis catus ENSFCAG00000012586 I
CREB3L4 Homo sapiens ENSG00000143578 D
ENSGALG00000002523 Gallus gallus ENSGALG00000002523 I
CREB3L4 Gorilla gorilla ENSGGOG00000005601 I
ENSLACG00000009185 Latimeria chalumnae ENSLACG00000009185 I
ENSLOCG00000006221 Lepisosteus oculatus ENSLOCG00000006221 I
ENSLOCG00000008658 Lepisosteus oculatus ENSLOCG00000008658 I
ENSMEUG00000013573 Macropus eugenii ENSMEUG00000013573 I
CREB3L4 Microcebus murinus ENSMICG00000010316 I
CREB3L3 Myotis lucifugus ENSMLUG00000008703 I
CREB3L4 Macaca mulatta ENSMMUG00000005008 I
CREB3L3 Monodelphis domestica ENSMODG00000000817 I
CREB3L4 Monodelphis domestica ENSMODG00000017299 I
ENSMPUG00000007975 Mustela putorius furo ENSMPUG00000007975 I
ENSNLEG00000010798 Nomascus leucogenys ENSNLEG00000010798 I
ENSOARG00000001743 Ovis aries ENSOARG00000001743 I
CREB3L4 Oryctolagus cuniculus ENSOCUG00000011784 I
CREB3L4 Ochotona princeps ENSOPRG00000003982 I
creb3l3a Oryzias latipes ENSORLG00000004610 I
ENSP00000271889 Macaca fascicularis ENSP00000271889 I
ENSP00000271889-D1 Bos grunniens ENSP00000271889-D1 I
ENSPANG00000006363 Papio anubis ENSPANG00000006363 I
CREB3L4 Procavia capensis ENSPCAG00000003143 I
ENSPFOG00000002309 Poecilia formosa ENSPFOG00000002309 I
ENSPPYG00000000792 Pongo abelii ENSPPYG00000000792 I
CREB3L4 Pan troglodytes ENSPTRG00000001368 I
CREB3L4 Pteropus vampyrus ENSPVAG00000011092 I
ENSSARG00000011575 Sorex araneus ENSSARG00000011575 I
ENSSHAG00000011761 Sarcophilus harrisii ENSSHAG00000011761 I
CREB3L4 Sus scrofa ENSSSCG00000006560 I
ENSSTOG00000014516 Ictidomys tridecemlineatus ENSSTOG00000014516 I
CREB3L4 Takifugu rubripes ENSTRUG00000011094 I
ENSXMAG00000001292 Xiphophorus maculatus ENSXMAG00000001292 I
ISCW001814 Ixodes scapularis ISCW001814 I
Myotis_brandtii_CREB3L3_10016301 Myotis brandtii Myotis_brandtii_CREB3L3_10016301 I
Myotis_brandtii_CREB3L4_10031903 Myotis brandtii Myotis_brandtii_CREB3L4_10031903 I
NEMVEDRAFT_v1g243817 Nematostella vectensis NEMVEDRAFT_v1g243817 I
Ogr06733 Ophisaurus gracilis Ogr06733 I
Pvit_02332 Pogona vitticeps Pvit_02332 I
Pvit_09828 Pogona vitticeps Pvit_09828 I
creb3l4 Xenopus tropicalis XB-GENE-5761389 I