CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.004G257000 *(Gossypium raimondii)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00447 (HSF_DNA-bind)	IPR000232	Gorai.004G257000	T243176_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.546	0.874
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.546	0.874
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.509	0.851
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.509	0.851
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.475	0.713
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.469	0.770
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.469	0.770
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.455	0.747
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.417	0.667
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.417	0.667
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.407	0.655
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.407	0.655
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.403	0.690
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.403	0.690
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.392	0.690
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.392	0.690
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.392	0.690
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.373	0.655
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.373	0.655
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.004G257000.1	HSF	25	115	FLSKTYDVVNDPSTDSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRK
Gorai.004G257000.2	HSF	25	115	FLSKTYDVVNDPSTDSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRK
Gorai.004G257000.3	HSF	25	115	FLSKTYDVVNDPSTDSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRK

Links
Other HSF family TFs
Other *Gossypium raimondii* TFs

1466 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGABI2DRAFT_150877	Agaricus bisporus	AGABI2DRAFT_150877	N
BOTBODRAFT_99872	Botryobasidium botryosum	BOTBODRAFT_99872	N
CC1G_09335	Coprinopsis cinerea	CC1G_09335	N
CERSUDRAFT_119121	Ceriporiopsis subvermispora	CERSUDRAFT_119121	N
CY34DRAFT_468895	Suillus luteus	CY34DRAFT_468895	N
DACRYDRAFT_114563	Dacryopinax sp	DACRYDRAFT_114563	N
estExt_fgenesh2_pm.C_30290	Heterobasidion annosum	estExt_fgenesh2_pm.C_30290	N
FOMPIDRAFT_1034579	Fomitopsis pinicola	FOMPIDRAFT_1034579	N
GALMADRAFT_97916	Galerina marginata	GALMADRAFT_97916	N
GLOTRDRAFT_120398	Gloeophyllum trabeum	GLOTRDRAFT_120398	N
HETIRDRAFT_476261	Heterobasidion irregulare	HETIRDRAFT_476261	N
JAAARDRAFT_35324	Jaapia argillacea	JAAARDRAFT_35324	N
K443DRAFT_662219	Laccaria amethystina	K443DRAFT_662219	N
LACBIDRAFT_313642	Laccaria bicolor	LACBIDRAFT_313642	N
M404DRAFT_995995	Pisolithus tinctorius	M404DRAFT_995995	N
M407DRAFT_20239	Tulasnella calospora	M407DRAFT_20239	N
M408DRAFT_328654	Serendipita vermifera	M408DRAFT_328654	N
M422DRAFT_173033	Sphaerobolus stellatus	M422DRAFT_173033	N
Moror_6251	Moniliophthora roreri	Moror_6251	N
PAXRUDRAFT_825716	Paxillus rubicundulus	PAXRUDRAFT_825716	N
PHACADRAFT_174788	Phanerochaete carnosa	PHACADRAFT_174788	N
PHLGIDRAFT_99458	Phlebiopsis gigantea	PHLGIDRAFT_99458	N
PILCRDRAFT_824046	Piloderma croceum	PILCRDRAFT_824046	N
PISMIDRAFT_28197	Pisolithus microcarpus	PISMIDRAFT_28197	N
PLEOSDRAFT_1112903	Pleurotus ostreatus	PLEOSDRAFT_1112903	N
POSPLDRAFT_104953	Postia placenta	POSPLDRAFT_104953	N
POSPLDRAFT_104955	Postia placenta	POSPLDRAFT_104955	N
SCHCODRAFT_83015	Schizophyllum commune	SCHCODRAFT_83015	N
SCLCIDRAFT_13363	Scleroderma citrinum	SCLCIDRAFT_13363	N
SERLA73DRAFT_122259	Serpula lacrymans	SERLA73DRAFT_122259	N
V565_091980	Rhizoctonia solani	V565_091980	N

Gorai.004G257000 (Gossypium raimondii) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1466 Related TFs

Gorai.004G257000 **(Gossypium raimondii)
HSF**