Alligator_sinensis_CCG003072.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG003072.1 T244507_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF9
M02258_2.00 		Sus scrofa
WNYGAAASY
RSTTTCRNW		 PBM
Weirauch et al.(2014)
pTH9287 		0.750 0.750
IRF9
M02257_2.00 		Ochotona princeps
DNYRAAAVND
HNBTTTYRNH		 PBM
Weirauch et al.(2014)
pTH9337 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003072.1 IRF 11 99

Links

Other IRF family TFs
Other Alligator sinensis TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_038710 Albugo laibachii ALNC14_038710 N 0.000
EMIHUDRAFT_417737 Emiliania huxleyi EMIHUDRAFT_417737 N 0.000
EMIHUDRAFT_430959 Emiliania huxleyi EMIHUDRAFT_430959 N 0.000
estExt_Genewise1.C_70435 Phytophthora capsici estExt_Genewise1.C_70435 N 0.000
F443_08670 Phytophthora parasitica F443_08670 N 0.000
fgenesh_scip_prom.28083.5589 Phytophthora lateralis fgenesh_scip_prom.28083.5589 N 0.000
fgenesh_scip_prom.46568.4406 Phytophthora kernoviae fgenesh_scip_prom.46568.4406 N 0.000
HpaG811065 Hyaloperonospora arabidopsidis HpaG811065 N 0.000
maker-pag1_scaffold_818-snap-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_818-snap-gene-0.3 N 0.000
maker-pir_contig_67-snap-gene-0.23 Pythium irregulare maker-pir_contig_67-snap-gene-0.23 N 0.000
maker-pve_contig_870-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_870-fgenesh-gene-0.0 N 0.000
Phyra86538 Phytophthora ramorum Phyra86538 N 0.000
Physo140839 Phytophthora sojae Physo140839 N 0.000
PITG_06748 Phytophthora infestans PITG_06748 N 0.000
PYU1_G010470 Pythium ultimum PYU1_G010470 N 0.000
SPRG_00677 Saprolegnia parasitica SPRG_00677 N 0.000