Alligator_sinensis_CCG008430.1 (Alligator sinensis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Alligator_sinensis_CCG008430.1 T244511_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.981 0.981
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.981 0.981
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.981 0.981
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.981 0.981
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.981 0.981
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.981 0.981
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.981 0.981
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.981 0.981
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.981 0.981
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.971 0.971
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.817 0.817
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.817 0.817
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.817 0.817
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.817 0.817
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.817 0.817
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.817 0.817
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.817 0.817
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.817 0.817
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.817 0.817
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.817 0.817
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.817 0.817
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.817 0.817
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.817 0.817
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG008430.1 IRF 353 457

Links

Other IRF family TFs
Other Alligator sinensis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_206080 Agaricus bisporus AGABI2DRAFT_206080 N 0.000
CC1G_14832 Coprinopsis cinerea CC1G_14832 N 0.000
CERSUDRAFT_93268 Ceriporiopsis subvermispora CERSUDRAFT_93268 N 0.000
CY34DRAFT_808438 Suillus luteus CY34DRAFT_808438 N 0.000
fgenesh1_pg.C_scaffold_3000282 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_3000282 N 0.000
FIBRA_08530 Fibroporia radiculosa FIBRA_08530 N 0.000
FOMPIDRAFT_99099 Fomitopsis pinicola FOMPIDRAFT_99099 N 0.000
GALMADRAFT_240824 Galerina marginata GALMADRAFT_240824 N 0.000
GLOTRDRAFT_138211 Gloeophyllum trabeum GLOTRDRAFT_138211 N 0.000
GYMLUDRAFT_244445 Gymnopus luxurians GYMLUDRAFT_244445 N 0.000
HETIRDRAFT_478421 Heterobasidion irregulare HETIRDRAFT_478421 N 0.000
K443DRAFT_672061 Laccaria amethystina K443DRAFT_672061 N 0.000
LACBIDRAFT_305525 Laccaria bicolor LACBIDRAFT_305525 N 0.000
M378DRAFT_8120 Amanita muscaria M378DRAFT_8120 N 0.000
M404DRAFT_882883 Pisolithus tinctorius M404DRAFT_882883 N 0.000
M413DRAFT_442898 Hebeloma cylindrosporum M413DRAFT_442898 N 0.000
MPER_01314 Moniliophthora perniciosa MPER_01314 N 0.000
PAXRUDRAFT_832240 Paxillus rubicundulus PAXRUDRAFT_832240 N 0.000
PHACADRAFT_32832 Phanerochaete carnosa PHACADRAFT_32832 N 0.000
PHLGIDRAFT_66452 Phlebiopsis gigantea PHLGIDRAFT_66452 N 0.000
PILCRDRAFT_819897 Piloderma croceum PILCRDRAFT_819897 N 0.000
PLEOSDRAFT_1105666 Pleurotus ostreatus PLEOSDRAFT_1105666 N 0.000
SCHCODRAFT_245859 Schizophyllum commune SCHCODRAFT_245859 N 0.000
SCLCIDRAFT_1214941 Scleroderma citrinum SCLCIDRAFT_1214941 N 0.000
SERLA73DRAFT_162624 Serpula lacrymans SERLA73DRAFT_162624 N 0.000