PGSC0003DMG400025400 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400025400 T245835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.744 0.744
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400065345 LOB 1 39
PGSC0003DMT400065346 LOB 45 143

Links

Other LOB family TFs
Other Solanum tuberosum TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL009743 Aedes aegypti AAEL009743 I 0.000
AAEL009933 Aedes aegypti AAEL009933 I 0.000
AARA011784 Anopheles arabiensis AARA011784 I 0.000
AATE001145 Anopheles atroparvus AATE001145 I 0.000
ACEP10423 Atta cephalotes ACEP10423 I 0.000
ACHR003915 Anopheles christyi ACHR003915 I 0.000
ACOC_0000951901 Angiostrongylus costaricensis ACOC_0000951901 I 0.000
ACYPI003711 Acyrthosiphon pisum ACYPI003711 I 0.000
ADAC008864 Anopheles darlingi ADAC008864 I 0.000
AEPI004973 Anopheles epiroticus AEPI004973 I 0.000
AFAF011271 Anopheles farauti AFAF011271 I 0.000
AFUN006867 Anopheles funestus AFUN006867 I 0.000
AGAP004664 Anopheles gambiae AGAP004664 I 0.000
AMAM010796 Anopheles maculatus AMAM010796 I 0.000
AMEC007997 Anopheles melas AMEC007997 I 0.000
AMIN000119 Anopheles minimus AMIN000119 I 0.000
ANCCAN_16140 Ancylostoma caninum ANCCAN_16140 I 0.000
ANCCEY_08302 Ancylostoma ceylanicum ANCCEY_08302 I 0.000
AQUA010393 Anopheles quadriannulatus AQUA010393 I 0.000
ASIS020073 Anopheles sinensis ASIS020073 I 0.000
ASU_13748 Ascaris suum ASU_13748 I 0.000
BGIBMGA006385 Bombyx mori BGIBMGA006385 I 0.000
Bm7133 Brugia malayi Bm7133 I 0.000
BXY_1644900 Bursaphelenchus xylophilus BXY_1644900 I 0.000
CapteG126009 Capitella teleta CapteG126009 I 0.000
CBG23030 Caenorhabditis briggsae CBG23030 I 0.000
CBN07280 Caenorhabditis brenneri CBN07280 I 0.000
Cflo_00841--XP_394119.2_APIME Camponotus floridanus Cflo_00841--XP_394119.2_APIME I 0.000
CGI_10027388 Crassostrea gigas CGI_10027388 I 0.000
CJA42104 Caenorhabditis japonica CJA42104 I 0.000
CLEC025235 Cimex lectularius CLEC025235 I 0.000
CPIJ001021 Culex quinquefasciatus CPIJ001021 I 0.000
CpipJ_CPIJ001021 Culex pipiens CpipJ_CPIJ001021 I 0.000
CRE24470 Caenorhabditis remanei CRE24470 I 0.000
D918_00513 Trichuris suis D918_00513 I 0.000
DAPPUDRAFT_347213 Daphnia pulex DAPPUDRAFT_347213 I 0.000
DICVIV_08822 Dictyocaulus viviparus DICVIV_08822 I 0.000
DME_0000789801 Dracunculus medinensis DME_0000789801 I 0.000
ECANG7_01860 Echinococcus canadensis ECANG7_01860 I 0.000
EFV62456 Trichinella spiralis EFV62456 I 0.000
EmuJ_000824600 Echinococcus multilocularis EmuJ_000824600 I 0.000
EmuJ_000959700 Echinococcus multilocularis EmuJ_000959700 I 0.000
ENSACAG00000017914 Anolis carolinensis ENSACAG00000017914 I 0.000
ENSAMEG00000000665 Ailuropoda melanoleuca ENSAMEG00000000665 I 0.000
ENSAMEG00000001858 Ailuropoda melanoleuca ENSAMEG00000001858 I 0.000
ENSAPLG00000008820 Anas platyrhynchos ENSAPLG00000008820 I 0.000
HOXC12 Bos taurus ENSBTAG00000000924 I 0.000
HOXD12 Bos taurus ENSBTAG00000004314 I 0.000
HOXC12 Canis familiaris ENSCAFG00000006645 I 0.000
HOXD12 Canis familiaris ENSCAFG00000013429 I 0.000
HOXC12 Callithrix jacchus ENSCJAG00000018806 I 0.000
HOXD12 Cavia porcellus ENSCPOG00000005496 I 0.000
HOXC12 Cavia porcellus ENSCPOG00000026314 I 0.000
ENSCSAG00000005459 Chlorocebus sabaeus ENSCSAG00000005459 I 0.000
ENSCSAG00000014464 Chlorocebus sabaeus ENSCSAG00000014464 I 0.000
HOXD12 Dasypus novemcinctus ENSDNOG00000047700 I 0.000
Hoxd12 Dipodomys ordii ENSDORG00000009434 I 0.000
HOXC12 Equus caballus ENSECAG00000024893 I 0.000
ENSFALG00000003122 Ficedula albicollis ENSFALG00000003122 I 0.000
HOXC12 Felis catus ENSFCAG00000023389 I 0.000
HOXC12 Homo sapiens ENSG00000123407 D 0.000
HOXD12 Homo sapiens ENSG00000170178 D 0.000
HOXD12 Gallus gallus ENSGALG00000009274 I 0.000
ENSGGOG00000001340 Gorilla gorilla ENSGGOG00000001340 I 0.000
ENSGGOG00000023318 Gorilla gorilla ENSGGOG00000023318 I 0.000
HOXC12 Gorilla gorilla ENSGGOG00000023684 I 0.000
ENSLACG00000009639 Latimeria chalumnae ENSLACG00000009639 I 0.000
HOXD12 Loxodonta africana ENSLAFG00000017497 I 0.000
HOXC12 Loxodonta africana ENSLAFG00000024750 I 0.000
ENSLOCG00000007146 Lepisosteus oculatus ENSLOCG00000007146 I 0.000
ENSMEUG00000009000 Macropus eugenii ENSMEUG00000009000 I 0.000
HOXD12 Meleagris gallopavo ENSMGAG00000009673 I 0.000
HOXD12 Microcebus murinus ENSMICG00000002172 I 0.000
HOXC12 Microcebus murinus ENSMICG00000011709 I 0.000
HOXD12 Myotis lucifugus ENSMLUG00000007009 I 0.000
HOXC12 Myotis lucifugus ENSMLUG00000026984 I 0.000
HOXC12 Macaca mulatta ENSMMUG00000004541 I 0.000
HOXD12 Macaca mulatta ENSMMUG00000023501 I 0.000
HOXD12 Monodelphis domestica ENSMODG00000009555 I 0.000
ENSMPUG00000005886 Mustela putorius furo ENSMPUG00000005886 I 0.000
ENSMPUG00000014025 Mustela putorius furo ENSMPUG00000014025 I 0.000
Hoxd12 Mus musculus ENSMUSG00000001823 I 0.000
Hoxc12 Mus musculus ENSMUSG00000050328 D 0.000
ENSNLEG00000006006 Nomascus leucogenys ENSNLEG00000006006 I 0.000
ENSNLEG00000017683 Nomascus leucogenys ENSNLEG00000017683 I 0.000
HOXD12 Ornithorhynchus anatinus ENSOANG00000004743 I 0.000
ENSOANG00000015091 Ornithorhynchus anatinus ENSOANG00000015091 I 0.000
ENSOARG00000000088 Ovis aries ENSOARG00000000088 I 0.000
ENSOARG00000016352 Ovis aries ENSOARG00000016352 I 0.000
Abd-B Drosophila melanogaster FBgn0000015 D 0.000
Abd-B Drosophila simulans FBgn0025043 I 0.000
Abd-B Drosophila sechellia FBgn0025061 I 0.000
GA11117 Drosophila pseudoobscura FBgn0071172 I 0.000
GF17921 Drosophila ananassae FBgn0094939 I 0.000
GG16806 Drosophila erecta FBgn0109036 I 0.000
GH18073 Drosophila grimshawi FBgn0125541 I 0.000
GI23752 Drosophila mojavensis FBgn0146477 I 0.000
GL23001 Drosophila persimilis FBgn0160591 I 0.000
GJ10598 Drosophila virilis FBgn0197878 I 0.000
GK13851 Drosophila willistoni FBgn0215859 I 0.000
GE26123 Drosophila yakuba FBgn0243162 I 0.000
GB51284 Apis mellifera GB51284 I 0.000
GPLIN_000726000 Globodera pallida GPLIN_000726000 I 0.000
HCOI00497700 Haemonchus contortus HCOI00497700 I 0.000
HCOI00497900 Haemonchus contortus HCOI00497900 I 0.000
HCOI01784000 Haemonchus contortus HCOI01784000 I 0.000
HDID_0000820601 Hymenolepis diminuta HDID_0000820601 I 0.000
HelroG110662 Helobdella robusta HelroG110662 I 0.000
HelroG127763 Helobdella robusta HelroG127763 I 0.000
HMEL025035 Heliconius melpomene HMEL025035 I 0.000
HmN_000187500 Hymenolepis microstoma HmN_000187500 I 0.000
HNAJ_0000530301 Hymenolepis nana HNAJ_0000530301 I 0.000
HPBE_0002125801 Heligmosomoides bakeri HPBE_0002125801 I 0.000
Hsal_01810--XP_394119.2_APIME Harpegnathos saltator Hsal_01810--XP_394119.2_APIME I 0.000
ISCW021042 Ixodes scapularis ISCW021042 I 0.000
KGM_01497 Danaus plexippus KGM_01497 I 0.000
L798_07386 Zootermopsis nevadensis L798_07386 I 0.000
L889_g9230 Steinernema feltiae L889_g9230 I 0.000
L892_g9141 Steinernema scapterisci L892_g9141 I 0.000
L893_g25351 Steinernema glaseri L893_g25351 I 0.000
L898_g12854 Steinernema monticolum L898_g12854 I 0.000
LCUP000270 Lucilia cuprina LCUP000270 I 0.000
LDEC005307 Leptinotarsa decemlineata LDEC005307 I 0.000
LLOJ006217 Lutzomyia longipalpis LLOJ006217 I 0.000
LOAG_12837 Loa loa LOAG_12837 I 0.000
LotgiG89720 Lottia gigantea LotgiG89720 I 0.000
MCINX017034 Melitaea cinxia MCINX017034 I 0.000
MCOS_0000513701 Mesocestoides corti MCOS_0000513701 I 0.000
MDOA007321 Musca domestica MDOA007321 I 0.000
MhA1_Contig468.frz3.gene38 Meloidogyne hapla MhA1_Contig468.frz3.gene38 I 0.000
Minc03842 Meloidogyne incognita Minc03842 I 0.000
Minc07879 Meloidogyne incognita Minc07879 I 0.000
NBR_0002007501 Nippostrongylus brasiliensis NBR_0002007501 I 0.000
nDi.2.2.2.g00407 Dirofilaria immitis nDi.2.2.2.g00407 I 0.000
nOo.2.0.1.g03745 Onchocerca ochengi nOo.2.0.1.g03745 I 0.000
NV15142 Nasonia vitripennis NV15142 I 0.000
Ocbimv22031197m.g Octopus bimaculoides Ocbimv22031197m.g I 0.000
OFLC_0000337501 Onchocerca flexuosa OFLC_0000337501 I 0.000
PHUM219670 Pediculus humanus PHUM219670 I 0.000
PPAI009128 Phlebotomus papatasi PPAI009128 I 0.000
PTRK_0000303300 Parastrongyloides trichosuri PTRK_0000303300 I 0.000
RSKR_0000904600 Rhabditophanes kr3021 RSKR_0000904600 I 0.000
Sakowv30000863m.g Saccoglossus kowalevskii Sakowv30000863m.g I 0.000
Sakowv30000864m.g Saccoglossus kowalevskii Sakowv30000864m.g I 0.000
SBAD_0000080701 Soboliphyme baturini SBAD_0000080701 I 0.000
scaffold1873-EXSNAP2012.2 Pristionchus exspectatus scaffold1873-EXSNAP2012.2 I 0.000
scaffold527-EXSNAP2012.16 Pristionchus exspectatus scaffold527-EXSNAP2012.16 I 0.000
SCUD_0001296601 Schistosoma curassoni SCUD_0001296601 I 0.000
SINV20763 Solenopsis invicta SINV20763 I 0.000
SMAR004172 Strigamia maritima SMAR004172 I 0.000
Smp_202120 Schistosoma mansoni Smp_202120 I 0.000
SMRZ_0000248701 Schistosoma margrebowiei SMRZ_0000248701 I 0.000
SMU15011167 Schmidtea mediterranea SMU15011167 I 0.000
SMU15024124 Schmidtea mediterranea SMU15024124 I 0.000
SMU15040585 Schmidtea mediterranea SMU15040585 I 0.000
SMUV_0000036501 Syphacia muris SMUV_0000036501 I 0.000
SMUV_0000627601 Syphacia muris SMUV_0000627601 I 0.000
SPAL_0000659000 Strongyloides papillosus SPAL_0000659000 I 0.000
SPU_002632 Strongylocentrotus purpuratus SPU_002632 I 0.000
SROB_0000632901 Schistosoma rodhaini SROB_0000632901 I 0.000
SSTP_0000071500 Strongyloides stercoralis SSTP_0000071500 I 0.000
SVE_1848200 Strongyloides venezuelensis SVE_1848200 I 0.000
TASK_0000423701 Taenia asiatica TASK_0000423701 I 0.000
TC000889 Tribolium castaneum TC000889 I 0.000
tetur20g02350 Tetranychus urticae tetur20g02350 I 0.000
TMUE_s0047001500 Trichuris muris TMUE_s0047001500 I 0.000
TRE_0000208301 Trichobilharzia regenti TRE_0000208301 I 0.000
TsM_000407000 Taenia solium TsM_000407000 I 0.000
TsM_001152100 Taenia solium TsM_001152100 I 0.000
TTAC_0000197601 Hydatigera taeniaeformis TTAC_0000197601 I 0.000
TTRE_0000023201 Trichuris trichiura TTRE_0000023201 I 0.000
php-3 Caenorhabditis elegans WBGene00004024 I 0.000
WBGene00245000 Onchocerca volvulus WBGene00245000 I 0.000
WUBG_14236 Wuchereria bancrofti WUBG_14236 I 0.000
YQE_04570 Dendroctonus ponderosae YQE_04570 I 0.000