Cla019510 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla019510 T246352_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.970 0.970
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.768 0.768
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla019510 LOB 10 108

Links

Other LOB family TFs
Other Citrullus lanatus TFs

325 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_02206 Capronia coronata A1O1_02206 N 0.000
A1O3_05646 Capronia epimyces A1O3_05646 N 0.000
A1O7_04752 Cladophialophora yegresii A1O7_04752 N 0.000
A1O9_09009 Exophiala aquamarina A1O9_09009 N 0.000
HMPREF1120_03172 Exophiala dermatitidis HMPREF1120_03172 N 0.000
PV04_04498 Capronia semiimmersa PV04_04498 N 0.000
PV05_01571 Exophiala xenobiotica PV05_01571 N 0.000
PV05_06232 Exophiala xenobiotica PV05_06232 N 0.000
PV06_06355 Exophiala oligosperma PV06_06355 N 0.000
PV07_05309 Cladophialophora immunda PV07_05309 N 0.000
PV08_08642 Exophiala spinifera PV08_08642 N 0.000
PV08_11643 Exophiala spinifera PV08_11643 N 0.000
PV10_04391 Exophiala mesophila PV10_04391 N 0.000
Z517_06419 Fonsecaea pedrosoi Z517_06419 N 0.000
Z518_00819 Rhinocladiella mackenziei Z518_00819 N 0.000
Z518_03126 Rhinocladiella mackenziei Z518_03126 N 0.000