Bra003346 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra003346 T248009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.965 0.859
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.965 0.859
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003346.1-P MADF 37 124

Links

Other MADF family TFs
Other Brassica rapa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002833 Oryza indica BGIOSGA002833 N 0.000
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I 0.000
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N 0.000
evm.TU.supercontig_21.7 Carica papaya evm.TU.supercontig_21.7 N 0.000
F775_00759 Aegilops tauschii F775_00759 N 0.000
F775_01873 Aegilops tauschii F775_01873 N 0.000
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.000
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.000
GRMZM2G088443 Zea mays GRMZM2G088443 I 0.000
GRMZM2G369629 Zea mays GRMZM2G369629 N 0.000
LPERR01G03590 Leersia perrieri LPERR01G03590 I 0.000
LPERR05G03980 Leersia perrieri LPERR05G03980 N 0.000
MLOC_69121 Hordeum vulgare MLOC_69121 N 0.000
OB01G13800 Oryza brachyantha OB01G13800 N 0.000
OB05G14140 Oryza brachyantha OB05G14140 N 0.000
OBART01G03950 Oryza barthii OBART01G03950 N 0.000
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N 0.000
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N 0.000
OLONG_015419 Oryza longistaminata OLONG_015419 N 0.000
OMERI01G03850 Oryza meridionalis OMERI01G03850 N 0.000
OMERI05G04410 Oryza meridionalis OMERI05G04410 N 0.000
ONIVA01G04390 Oryza nivara ONIVA01G04390 N 0.000
ONIVA05G04820 Oryza nivara ONIVA05G04820 N 0.000
OPUNC01G03610 Oryza punctata OPUNC01G03610 N 0.000
OPUNC05G04080 Oryza punctata OPUNC05G04080 N 0.000
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N 0.000
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N 0.000
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N 0.000
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N 0.000
OS05G0163900 Oryza sativa OS05G0163900 N 0.000
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I 0.000
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I 0.000
Pavir.J32610 Panicum virgatum Pavir.J32610 N 0.000
PDK_20s1551661g004 Phoenix dactylifera PDK_20s1551661g004 N 0.000
Sb03g005250 Sorghum bicolor Sb03g005250 N 0.000
Sb09g004820 Sorghum bicolor Sb09g004820 N 0.000
Si002655m.g Setaria italica Si002655m.g I 0.000
Si012213m.g Setaria italica Si012213m.g N 0.000
TCM_029711 Theobroma cacao TCM_029711 I 0.000
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N 0.000
Traes_1AS_96F0745A2 Triticum aestivum Traes_1AS_96F0745A2 N 0.000
Traes_1BS_1F372BED3 Triticum aestivum Traes_1BS_1F372BED3 N 0.000
Traes_1DS_CD79239C8 Triticum aestivum Traes_1DS_CD79239C8 N 0.000
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N 0.000
TRIUR3_07421 Triticum urartu TRIUR3_07421 N 0.000
TRIUR3_12818 Triticum urartu TRIUR3_12818 N 0.000
TRIUR3_21807 Triticum urartu TRIUR3_21807 N 0.000