orange1.1g003766m.g (Citrus sinensis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 orange1.1g003766m.g T250789_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.919 0.810
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.919 0.810
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g003766m MADF 105 176
orange1.1g003766m MADF 540 610
orange1.1g005124m MADF 105 176
orange1.1g005124m MADF 540 610
orange1.1g005262m MADF 105 176
orange1.1g005262m MADF 540 610
orange1.1g005787m MADF 9 57
orange1.1g005787m MADF 421 491

Links

Other MADF family TFs
Other Citrus sinensis TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_199954 Agaricus bisporus AGABI2DRAFT_199954 N
BOTBODRAFT_112983 Botryobasidium botryosum BOTBODRAFT_112983 N
CERSUDRAFT_20106 Ceriporiopsis subvermispora CERSUDRAFT_20106 N
CY34DRAFT_801082 Suillus luteus CY34DRAFT_801082 N
estExt_Genewise1.C_21367 Heterobasidion annosum estExt_Genewise1.C_21367 N
FIBRA_08791 Fibroporia radiculosa FIBRA_08791 N
FOMPIDRAFT_100979 Fomitopsis pinicola FOMPIDRAFT_100979 N
GALMADRAFT_239209 Galerina marginata GALMADRAFT_239209 N
GLOTRDRAFT_137209 Gloeophyllum trabeum GLOTRDRAFT_137209 N
gwh2.1.333.1 Phanerochaete chrysosporium gwh2.1.333.1 N
GYMLUDRAFT_162284 Gymnopus luxurians GYMLUDRAFT_162284 N
HETIRDRAFT_309579 Heterobasidion irregulare HETIRDRAFT_309579 N
JAAARDRAFT_32954 Jaapia argillacea JAAARDRAFT_32954 N
M378DRAFT_158512 Amanita muscaria M378DRAFT_158512 N
M404DRAFT_992782 Pisolithus tinctorius M404DRAFT_992782 N
M408DRAFT_272137 Serendipita vermifera M408DRAFT_272137 N
M413DRAFT_438140 Hebeloma cylindrosporum M413DRAFT_438140 N
PAXRUDRAFT_832723 Paxillus rubicundulus PAXRUDRAFT_832723 N
PHLGIDRAFT_284945 Phlebiopsis gigantea PHLGIDRAFT_284945 N
PILCRDRAFT_789166 Piloderma croceum PILCRDRAFT_789166 N
PISMIDRAFT_85664 Pisolithus microcarpus PISMIDRAFT_85664 N
PLEOSDRAFT_42459 Pleurotus ostreatus PLEOSDRAFT_42459 N
SCHCODRAFT_269936 Schizophyllum commune SCHCODRAFT_269936 N
V565_076910 Rhizoctonia solani V565_076910 N