CANTEDRAFT_132918 (Candida tenuis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 CANTEDRAFT_132918 T253463_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.875 0.875
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.875 0.875
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.875 0.875
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.875 0.875
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.875 0.875
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.875 0.875
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.875 0.875
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.792 0.792
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.792 0.792
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.792 0.792
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.792 0.792
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.792 0.792
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.792 0.792
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.792 0.792
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.792 0.792
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.792 0.792
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.792 0.792
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.792 0.792
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.792 0.792
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.792 0.792
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.792 0.792
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.792 0.792
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.792 0.792
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.792 0.792
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.792 0.792
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.792 0.792
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.792 0.792
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.792 0.792
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.792 0.792
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.750 0.750
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.750 0.750
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		0.729 0.729
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		0.729 0.729
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		0.729 0.729
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGV66662 MADS box 56 103

Links

Other MADS box family TFs
Other Candida tenuis TFs

497 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0000619901 Ascaris lumbricoides ALUE_0000619901 N
ANCCAN_05450 Ancylostoma caninum ANCCAN_05450 N
ANCDUO_15741 Ancylostoma duodenale ANCDUO_15741 N
ASU_13766 Ascaris suum ASU_13766 N
Bm4333 Brugia malayi Bm4333 N
BTMF_0000486301 Brugia timori BTMF_0000486301 N
BXY_0672000 Bursaphelenchus xylophilus BXY_0672000 N
CBG22107 Caenorhabditis briggsae CBG22107 N
CBN30232 Caenorhabditis brenneri CBN30232 N
CBN30270 Caenorhabditis brenneri CBN30270 N
CJA08191 Caenorhabditis japonica CJA08191 N
CRE03949 Caenorhabditis remanei CRE03949 N
DICVIV_09346 Dictyocaulus viviparus DICVIV_09346 N
DME_0000931601 Dracunculus medinensis DME_0000931601 N
EEL_0000684201 Elaeophora elaphi EEL_0000684201 N
EVEC_0001364401 Enterobius vermicularis EVEC_0001364401 N
GPLIN_000440300 Globodera pallida GPLIN_000440300 N
GPUH_0001663001 Gongylonema pulchrum GPUH_0001663001 N
Hba_11200 Heterorhabditis bacteriophora Hba_11200 N
HPBE_0002612401 Heligmosomoides bakeri HPBE_0002612401 N
L596_g19795 Steinernema carpocapsae L596_g19795 N
L889_g2315 Steinernema feltiae L889_g2315 N
L892_g26146 Steinernema scapterisci L892_g26146 N
L893_g25152 Steinernema glaseri L893_g25152 N
L898_g34435 Steinernema monticolum L898_g34435 N
LOAG_08456 Loa loa LOAG_08456 N
maker-nMf.1.1.scaf23008-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf23008-snap-gene-0.4 N
MhA1_Contig3017.frz3.gene1 Meloidogyne hapla MhA1_Contig3017.frz3.gene1 N
nAv.1.0.1.g02967 Acanthocheilonema viteae nAv.1.0.1.g02967 N
NBR_0000074101 Nippostrongylus brasiliensis NBR_0000074101 N
nDi.2.2.2.g01958 Dirofilaria immitis nDi.2.2.2.g01958 N
nLs.2.1.2.g00565 Litomosoides sigmodontis nLs.2.1.2.g00565 N
nOo.2.0.1.g03319 Onchocerca ochengi nOo.2.0.1.g03319 N
OESDEN_08787 Oesophagostomum dentatum OESDEN_08787 N
OESDEN_21968 Oesophagostomum dentatum OESDEN_21968 N
OFLC_0001268901 Onchocerca flexuosa OFLC_0001268901 N
Ppa-hmbx-1 Pristionchus pacificus PPA23312 N
PTRK_0001365600 Parastrongyloides trichosuri PTRK_0001365600 N
RSKR_0001024700 Rhabditophanes kr3021 RSKR_0001024700 N
SMUV_0000066701 Syphacia muris SMUV_0000066701 N
SPAL_0000486600 Strongyloides papillosus SPAL_0000486600 N
SSTP_0000566900 Strongyloides stercoralis SSTP_0000566900 N
SVE_0169500 Strongyloides venezuelensis SVE_0169500 N
SVUK_0000275901 Strongylus vulgaris SVUK_0000275901 N
TCLT_0000269001 Thelazia callipaeda TCLT_0000269001 N
TCNE_0000831801 Toxocara canis TCNE_0000831801 N
hmbx-1 Caenorhabditis elegans WBGene00018786 N
WBGene00237307 Onchocerca volvulus WBGene00237307 N
WUBG_01272 Wuchereria bancrofti WUBG_01272 N