SRF (Cavia porcellus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSCPOG00000022327 T253608_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015471 MADS box 16 42

Links

Other MADS box family TFs
Other Cavia porcellus TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BAUCODRAFT_37166 Baudoinia compniacensis BAUCODRAFT_37166 I 0.000
Bcin07g06260 Botrytis cinerea Bcin07g06260 I 0.000
CFIO01_12540 Colletotrichum fioriniae CFIO01_12540 I 0.000
CGGC5_3069 Colletotrichum gloeosporioides CGGC5_3069 N 0.000
CH063_02263 Colletotrichum higginsianum CH063_02263 I 0.000
CHGG_04697 Chaetomium globosum CHGG_04697 I 0.000
Cob_10631 Colletotrichum orbiculare Cob_10631 N 0.000
CSUB01_03432 Colletotrichum sublineola CSUB01_03432 N 0.000
DOTSEDRAFT_161080 Dothistroma septosporum DOTSEDRAFT_161080 I 0.000
estExt_Genewise1Plus.C_31316 Neurospora discreta estExt_Genewise1Plus.C_31316 I 0.000
e_gw1.5.1618.1 Mycosphaerella graminicola e_gw1.5.1618.1 I 0.000
e_gw1.7.93.1 Mycosphaerella fijiensis e_gw1.7.93.1 I 0.000
GGTG_02836 Gaeumannomyces graminis GGTG_02836 I 0.000
GLRG_02919 Colletotrichum graminicola GLRG_02919 I 0.000
H102_02976 Trichophyton rubrum H102_02976 I 0.000
H105_02995 Trichophyton soudanense H105_02995 I 0.000
M378DRAFT_463994 Amanita muscaria M378DRAFT_463994 I 0.000
MAPG_00999 Magnaporthe poae MAPG_00999 I 0.000
MBM_06665 Marssonina brunnea MBM_06665 I 0.000
MGG_12339 Magnaporthe oryzae MGG_12339 I 0.000
MPH_12582 Macrophomina phaseolina MPH_12582 I 0.000
MYCFIDRAFT_34745 Pseudocercospora fijiensis MYCFIDRAFT_34745 I 0.000
Mycgr3G41440 Zymoseptoria tritici Mycgr3G41440 I 0.000
NCU07675 Neurospora crassa NCU07675 D 0.000
NEUTE1DRAFT_60106 Neurospora tetrasperma NEUTE1DRAFT_60106 I 0.000
PFICI_04665 Pestalotiopsis fici PFICI_04665 I 0.000
PV09_03219 Verruconis gallopava PV09_03219 I 0.000
S40285_01002 Stachybotrys chlorohalonata S40285_01002 N 0.000
S40288_05338 Stachybotrys chartarum S40288_05338 N 0.000
SBOR_4149 Sclerotinia borealis SBOR_4149 I 0.000
SEPMUDRAFT_148959 Sphaerulina musiva SEPMUDRAFT_148959 I 0.000
SMAC_00876 Sordaria macrospora SMAC_00876 I 0.000
TRIVIDRAFT_221632 Trichoderma virens TRIVIDRAFT_221632 I 0.000
UCRNP2_10087 Neofusicoccum parvum UCRNP2_10087 I 0.000