SRF (Loxodonta africana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 ENSLAFG00000010278 T253693_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000008610 MADS box 1 27

Links

Other MADS box family TFs
Other Loxodonta africana TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_121841 Agaricus bisporus AGABI2DRAFT_121841 N
BN946_scf184902.g31 Trametes cinnabarina BN946_scf184902.g31 N
BOTBODRAFT_462541 Botryobasidium botryosum BOTBODRAFT_462541 N
CC1G_01569 Coprinopsis cinerea CC1G_01569 N
CERSUDRAFT_116480 Ceriporiopsis subvermispora CERSUDRAFT_116480 N
CY34DRAFT_557025 Suillus luteus CY34DRAFT_557025 N
DICSQDRAFT_147115 Dichomitus squalens DICSQDRAFT_147115 N
FOMPIDRAFT_1130876 Fomitopsis pinicola FOMPIDRAFT_1130876 N
GALMADRAFT_224580 Galerina marginata GALMADRAFT_224580 N
GLOTRDRAFT_18412 Gloeophyllum trabeum GLOTRDRAFT_18412 N
GYMLUDRAFT_145769 Gymnopus luxurians GYMLUDRAFT_145769 N
GYMLUDRAFT_59059 Gymnopus luxurians GYMLUDRAFT_59059 N
HETIRDRAFT_322707 Heterobasidion irregulare HETIRDRAFT_322707 N
HYDPIDRAFT_177790 Hydnomerulius pinastri HYDPIDRAFT_177790 N
JAAARDRAFT_36799 Jaapia argillacea JAAARDRAFT_36799 N
K443DRAFT_384813 Laccaria amethystina K443DRAFT_384813 N
LACBIDRAFT_293949 Laccaria bicolor LACBIDRAFT_293949 N
M378DRAFT_335299 Amanita muscaria M378DRAFT_335299 N
M413DRAFT_251633 Hebeloma cylindrosporum M413DRAFT_251633 N
M422DRAFT_51716 Sphaerobolus stellatus M422DRAFT_51716 N
Moror_9126 Moniliophthora roreri Moror_9126 N
MPER_02700 Moniliophthora perniciosa MPER_02700 N
PAXINDRAFT_171258 Paxillus involutus PAXINDRAFT_171258 N
PAXRUDRAFT_13038 Paxillus rubicundulus PAXRUDRAFT_13038 N
PHACADRAFT_260812 Phanerochaete carnosa PHACADRAFT_260812 N
PILCRDRAFT_820945 Piloderma croceum PILCRDRAFT_820945 N
PILCRDRAFT_88827 Piloderma croceum PILCRDRAFT_88827 N
PISMIDRAFT_111299 Pisolithus microcarpus PISMIDRAFT_111299 N
PLEOSDRAFT_1059069 Pleurotus ostreatus PLEOSDRAFT_1059069 N
PUNSTDRAFT_122479 Punctularia strigosozonata PUNSTDRAFT_122479 N
SCHCODRAFT_66326 Schizophyllum commune SCHCODRAFT_66326 N
SCHCODRAFT_86018 Schizophyllum commune SCHCODRAFT_86018 N
SCLCIDRAFT_18361 Scleroderma citrinum SCLCIDRAFT_18361 N
SERLA73DRAFT_65990 Serpula lacrymans SERLA73DRAFT_65990 N
V565_052410 Rhizoctonia solani V565_052410 N