CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GRMZM2G005155 *(Zea mays)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	GRMZM2G005155	T254265_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
M17_MAIZE M10959_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$M17_01	0.750	0.750
AGL16 M06987_2.00	Arabidopsis thaliana	TWCCHAAWDDGGWAA	TTWCCHHWTTDGGWA	Dap-seq OMalley et al.(2016) AGL16_col_a	0.708	0.708
AGL16 M06988_2.00	Arabidopsis thaliana	WDWNTTWCCHWAWWDGGAAAS	STTTCCHWWTWDGGWAANWHW	Dap-seq OMalley et al.(2016) AGL16_colamp_a	0.708	0.708
AGL42 M06995_2.00	Arabidopsis thaliana	RATGATG	CATCATY	Dap-seq OMalley et al.(2016) AGL42_col_a	0.708	0.708
Q9FVN1_MAIZE M10982_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS2_03	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GRMZM2G005155_P01	MADS box	10	57	KIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEY
GRMZM2G005155_P02	MADS box	10	57	KIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEY
GRMZM2G005155_P03	MADS box	10	57	KIENPTNRQVTFSKRRMGLFKKANELAILCDAQIGVIIFSGSGRMYEY

Links
Other MADS box family TFs
Other *Zea mays* TFs

179 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action