GRMZM5G814279 (Zea mays)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GRMZM5G814279 T254332_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.958 0.958
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.958 0.958
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.917 0.917
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.771 0.771
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.771 0.771
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.771 0.771
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM5G814279_P01 MADS box 10 57
GRMZM5G814279_P02 MADS box 10 57

Links

Other MADS box family TFs
Other Zea mays TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000000561 Astyanax mexicanus ENSAMXG00000000561 N 0.000
aebp2 Danio rerio ENSDARG00000006038 N 0.000
ENSFALG00000001055 Ficedula albicollis ENSFALG00000001055 N 0.000
ENSGACG00000010024 Gasterosteus aculeatus ENSGACG00000010024 N 0.000
aebp2 Gasterosteus aculeatus ENSGACG00000019249 N 0.000
ENSGMOG00000005290 Gadus morhua ENSGMOG00000005290 N 0.000
ENSLOCG00000015421 Lepisosteus oculatus ENSLOCG00000015421 N 0.000
ENSONIG00000008507 Oreochromis niloticus ENSONIG00000008507 N 0.000
ENSORLG00000004512 Oryzias latipes ENSORLG00000004512 N 0.000
aebp2 Oryzias latipes ENSORLG00000012453 N 0.000
ENSPFOG00000005718 Poecilia formosa ENSPFOG00000005718 N 0.000
ENSPFOG00000008425 Poecilia formosa ENSPFOG00000008425 N 0.000
aebp2 Takifugu rubripes ENSTRUG00000010318 N 0.000
ENSXMAG00000001328 Xiphophorus maculatus ENSXMAG00000001328 N 0.000
ENSXMAG00000016412 Xiphophorus maculatus ENSXMAG00000016412 N 0.000