OGLUM06G28660 (Oryza glumaepatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OGLUM06G28660 T255064_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		1.000 1.000
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.812 0.812
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.771 0.771
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.771 0.771
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.729 0.729
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM06G28660.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza glumaepatula TFs

308 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_07740 Capronia coronata A1O1_07740 N 0.000
A1O3_09951 Capronia epimyces A1O3_09951 N 0.000
A1O5_05390 Cladophialophora psammophila A1O5_05390 N 0.000
A1O7_06553 Cladophialophora yegresii A1O7_06553 N 0.000
G647_05980 Cladophialophora carrionii G647_05980 N 0.000
HMPREF1120_03788 Exophiala dermatitidis HMPREF1120_03788 N 0.000
HMPREF1541_00734 Cyphellophora europaea HMPREF1541_00734 N 0.000
PV04_06958 Capronia semiimmersa PV04_06958 N 0.000
PV05_08276 Exophiala xenobiotica PV05_08276 N 0.000
PV06_01995 Exophiala oligosperma PV06_01995 N 0.000
PV07_03069 Cladophialophora immunda PV07_03069 N 0.000
PV08_02867 Exophiala spinifera PV08_02867 N 0.000
PV10_08335 Exophiala mesophila PV10_08335 N 0.000
PV11_06361 Exophiala sideris PV11_06361 N 0.000
Z517_05580 Fonsecaea pedrosoi Z517_05580 N 0.000
Z518_05924 Rhinocladiella mackenziei Z518_05924 N 0.000
Z518_10675 Rhinocladiella mackenziei Z518_10675 N 0.000
Z519_08264 Cladophialophora bantiana Z519_08264 N 0.000