CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OMERI12G08970 *(Oryza meridionalis)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00319 (SRF-TF)	IPR002100	OMERI12G08970	T255212_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q9ATE2_PETHY M11007_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP29_01	0.812	0.812
Q7X9I6_MALDO M11023_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS12_02	0.771	0.771
MADS15 M10972_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS15_01	0.771	0.771
O82695_MALDO M11019_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS5_01	0.771	0.771
squamosa M02697_2.00	Antirrhinum majus	MYAWAWAWRGHAAN	NTTDCYWTWTWTRK	SELEX Mathelier et al.(2014) MA0082.1	0.750	0.750
AP1 M08144_2.00	Arabidopsis thaliana	MYAAAAAWRGAAA	TTTCYWTTTTTRK	ChIP-seq Mathelier et al.(2014) MA0940.1	0.750	0.750
Q9LEI3_HORVU M10985_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM3_01	0.750	0.750
MLOC_61901 M10964_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM8_01	0.750	0.750
Q8GT99_TOBAC M11006_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_02	0.750	0.750
MADS18 M10973_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS18_01	0.750	0.750
Q9FR84_MAIZE M10981_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_03	0.750	0.750
AP1 M10905_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADSA_Q2	0.750	0.750
Q9SBQ1_PETHY M11017_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PFG_01	0.750	0.750
Q38742_ANTMA M11000_2.00	Antirrhinum majus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SQUA_01	0.750	0.750
Q41829_MAIZE M10977_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ZAP1_02	0.750	0.750
AGL15 M06992_2.00	Arabidopsis thaliana	WNTTWCCHAAWDWRGAAAN	NTTTCYWHWTTDGGWAANW	Dap-seq OMalley et al.(2016) AGL15_col_a	0.729	0.729
AGL15 M06993_2.00	Arabidopsis thaliana	DNTTWCCHAAWDDRGAAANHH	DDNTTTCYHHWTTDGGWAANH	Dap-seq OMalley et al.(2016) AGL15_colamp_a	0.729	0.729
AGL15 M10927_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_01	0.729	0.729
AGL15 M10928_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_02	0.729	0.729
Q9ZRA5_MALDO M11030_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS2_04	0.729	0.729
MAD14_ORYSJ M10960_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS14_01	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*