Smp_097730 (Schistosoma mansoni)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Smp_097730 T256279_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.729 0.729
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.729 0.729
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.729 0.729
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.729 0.729
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.729 0.729
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.729 0.729
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.729 0.729
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.729 0.729
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.729 0.729
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.729 0.729
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.729 0.729
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.729 0.729
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.729 0.729
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.729 0.729
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.729 0.729
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.729 0.729
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.729 0.729
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.729 0.729
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.729 0.729
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.729 0.729
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.729 0.729
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.729 0.729
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Smp_097730.1:pep MADS box 124 171

Links

Other MADS box family TFs
Other Schistosoma mansoni TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_06449 Capronia coronata A1O1_06449 I 0.000
A1O3_05958 Capronia epimyces A1O3_05958 I 0.000
A1O9_08054 Exophiala aquamarina A1O9_08054 I 0.000
AB07605.1 Alternaria brassicicola AB07605.1 I 0.000
AUEXF2481DRAFT_66369 Aureobasidium subglaciale AUEXF2481DRAFT_66369 I 0.000
BAUCODRAFT_144662 Baudoinia compniacensis BAUCODRAFT_144662 I 0.000
BBA_02802 Beauveria bassiana BBA_02802 I 0.000
Bcin11g01030 Botrytis cinerea Bcin11g01030 I 0.000
ACLA_045510 Aspergillus clavatus CADACLAG00004903 I 0.000
CADAFLAG00005111 Aspergillus flavus CADAFLAG00005111 I 0.000
CADAORAG00008049 Aspergillus oryzae CADAORAG00008049 I 0.000
NFIA_109950 Neosartorya fischeri CADNFIAG00010127 I 0.000
CGGC5_8021 Colletotrichum gloeosporioides CGGC5_8021 I 0.000
CH063_10569 Colletotrichum higginsianum CH063_10569 I 0.000
CIMG_04206 Coccidioides immitis CIMG_04206 I 0.000
COCC4DRAFT_160926 Bipolaris maydis COCC4DRAFT_160926 I 0.000
COCCADRAFT_85149 Bipolaris zeicola COCCADRAFT_85149 I 0.000
COCMIDRAFT_82613 Bipolaris oryzae COCMIDRAFT_82613 I 0.000
COCSADRAFT_96143 Bipolaris sorokiniana COCSADRAFT_96143 I 0.000
COCVIDRAFT_104407 Bipolaris victoriae COCVIDRAFT_104407 I 0.000
CPC735_002210 Coccidioides posadasii CPC735_002210 I 0.000
CPUR_00789 Claviceps purpurea CPUR_00789 I 0.000
CTHT_0044790 Chaetomium thermophilum CTHT_0044790 I 0.000
DOTSEDRAFT_67939 Dothistroma septosporum DOTSEDRAFT_67939 I 0.000
estExt_fgenesh2_pg.C_60336 Neurospora discreta estExt_fgenesh2_pg.C_60336 I 0.000
estExt_Genewise1.C_90067 Cryphonectria parasitica estExt_Genewise1.C_90067 I 0.000
estExt_Genewise1Plus.C_60215 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_60215 I 0.000
EURHEDRAFT_379254 Aspergillus ruber EURHEDRAFT_379254 I 0.000
e_gw1.1.1408.1 Mycosphaerella fijiensis e_gw1.1.1408.1 I 0.000
e_gw1.1.252.1 Mycosphaerella graminicola e_gw1.1.252.1 I 0.000
e_gw1.2.590.1 Nectria haematococca e_gw1.2.590.1 I 0.000
FVEG_02315 Fusarium verticillioides FVEG_02315 I 0.000
GMDG_01147 Pseudogymnoascus destructans GMDG_01147 I 0.000
H105_04860 Trichophyton soudanense H105_04860 I 0.000
HMPREF1120_03967 Exophiala dermatitidis HMPREF1120_03967 I 0.000
HMPREF1541_00698 Cyphellophora europaea HMPREF1541_00698 I 0.000
HMPREF1624_06429 Sporothrix schenckii HMPREF1624_06429 I 0.000
LEMA_P051310.1 Leptosphaeria maculans LEMA_P051310.1 I 0.000
M437DRAFT_52991 Aureobasidium melanogenum M437DRAFT_52991 I 0.000
M438DRAFT_297102 Aureobasidium pullulans M438DRAFT_297102 I 0.000
MAJ_00011 Metarhizium majus MAJ_00011 I 0.000
MBM_06071 Marssonina brunnea MBM_06071 I 0.000
MBR_02626 Metarhizium brunneum MBR_02626 I 0.000
MGG_00318 Magnaporthe oryzae MGG_00318 I 0.000
MGU_00389 Metarhizium guizhouense MGU_00389 I 0.000
MGYG_01875 Microsporum gypseum MGYG_01875 I 0.000
MPH_05179 Macrophomina phaseolina MPH_05179 I 0.000
MYCFIDRAFT_125368 Pseudocercospora fijiensis MYCFIDRAFT_125368 I 0.000
Mycgr3G34788 Zymoseptoria tritici Mycgr3G34788 I 0.000
NCU05536 Neurospora crassa NCU05536 D 0.000
NechaG35775 Fusarium solani NechaG35775 I 0.000
NEUTE1DRAFT_68861 Neurospora tetrasperma NEUTE1DRAFT_68861 I 0.000
OIDMADRAFT_53648 Oidiodendron maius OIDMADRAFT_53648 I 0.000
PDE_09026 Penicillium oxalicum PDE_09026 I 0.000
PFICI_15217 Pestalotiopsis fici PFICI_15217 I 0.000
PMAA_027470 Penicillium marneffei PMAA_027470 I 0.000
PMAA_027470 Talaromyces marneffei PMAA_027470 I 0.000
PODANS_4_4120 Podospora anserina PODANS_4_4120 I 0.000
PTRG_00822 Pyrenophora triticirepentis PTRG_00822 I 0.000
PTT_09374 Pyrenophora teres PTT_09374 I 0.000
PV04_06889 Capronia semiimmersa PV04_06889 I 0.000
PV05_09062 Exophiala xenobiotica PV05_09062 I 0.000
PV06_02578 Exophiala oligosperma PV06_02578 I 0.000
PV07_03725 Cladophialophora immunda PV07_03725 I 0.000
PV09_02460 Verruconis gallopava PV09_02460 I 0.000
PV10_08688 Exophiala mesophila PV10_08688 I 0.000
PV11_06702 Exophiala sideris PV11_06702 I 0.000
PVAR5_4134 Byssochlamys spectabilis PVAR5_4134 I 0.000
S40288_06147 Stachybotrys chartarum S40288_06147 I 0.000
SAPIO_CDS10911 Scedosporium apiospermum SAPIO_CDS10911 I 0.000
SBOR_5623 Sclerotinia borealis SBOR_5623 I 0.000
SEPMUDRAFT_153702 Sphaerulina musiva SEPMUDRAFT_153702 I 0.000
SETTUDRAFT_122496 Setosphaeria turcica SETTUDRAFT_122496 I 0.000
SNOG_07159 Stagonospora nodorum SNOG_07159 I 0.000
THITE_2110543 Thielavia terrestris THITE_2110543 I 0.000
TRIATDRAFT_223010 Trichoderma atroviride TRIATDRAFT_223010 I 0.000
TRIVIDRAFT_113125 Trichoderma virens TRIVIDRAFT_113125 I 0.000
TSTA_071270 Talaromyces stipitatus TSTA_071270 I 0.000
U727_0043025041 Penicillium solitum U727_0043025041 I 0.000
UCRNP2_6034 Neofusicoccum parvum UCRNP2_6034 I 0.000
V499_00565 Pseudogymnoascus pannorum V499_00565 I 0.000
VDAG_07426 Verticillium dahliae VDAG_07426 I 0.000
VDBG_09267 Verticillium alfalfae VDBG_09267 I 0.000
VDBG_09267 Verticillium albo atrum VDBG_09267 I 0.000
VHEMI06707 Torrubiella hemipterigena VHEMI06707 I 0.000
W97_06636 Coniosporium apollinis W97_06636 I 0.000
Z518_02768 Rhinocladiella mackenziei Z518_02768 I 0.000