SMP1 (Saccharomyces cerevisiae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 YBR182C T256839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00		 Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1		 (Direct) (Direct)
SMP1
M08587_2.00		 Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.917 0.917
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01557_2.00 MADS box 10 57

DNA Binding Domains

Protein ID Domain From To Sequence
YBR182C MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces cerevisiae TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G32950 Brachypodium distachyon BRADI1G32950 N 0.000
F775_25475 Aegilops tauschii F775_25475 N 0.000
MLOC_60965 Hordeum vulgare MLOC_60965 N 0.000
Traes_2AL_232DE3B52 Triticum aestivum Traes_2AL_232DE3B52 N 0.000
Traes_3DL_575C5670C Triticum aestivum Traes_3DL_575C5670C N 0.000
Traes_3DL_80E8CBB73 Triticum aestivum Traes_3DL_80E8CBB73 N 0.000
Traes_4AL_161D3D25E Triticum aestivum Traes_4AL_161D3D25E N 0.000
Traes_5BS_B7F04C1A5 Triticum aestivum Traes_5BS_B7F04C1A5 N 0.000
Traes_5DL_34CCC8525 Triticum aestivum Traes_5DL_34CCC8525 N 0.000
Traes_6BL_3F20B009E Triticum aestivum Traes_6BL_3F20B009E N 0.000
Traes_7BL_8492576A6 Triticum aestivum Traes_7BL_8492576A6 N 0.000
TRIUR3_06404 Triticum urartu TRIUR3_06404 N 0.000