Aan_R005414 (Calypte anna)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Aan_R005414 T256864_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.963 0.963
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.963 0.963
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.963 0.963
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.963 0.963
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.963 0.963
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.963 0.963
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.963 0.963
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.963 0.963
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.963 0.963
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.963 0.963
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.963 0.963
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.963 0.963
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.963 0.963
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.963 0.963
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.963 0.963
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.963 0.963
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.963 0.963
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.963 0.963
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.963 0.963
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.963 0.963
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.963 0.963
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.963 0.963
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.963 0.963
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.926 0.926
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.926 0.926
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.852 0.852
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.815 0.815
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.815 0.815
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.815 0.815
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.815 0.815
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.815 0.815
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.815 0.815
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aan_R005414 MADS box 1 27

Links

Other MADS box family TFs
Other Calypte anna TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_04845 Capronia epimyces A1O3_04845 I
A1O5_10900 Cladophialophora psammophila A1O5_10900 I
A1O7_09067 Cladophialophora yegresii A1O7_09067 I
A1O9_08529 Exophiala aquamarina A1O9_08529 I
ACRE_046280 Acremonium chrysogenum ACRE_046280 I
AOL_s00004g609 Arthrobotrys oligospora AOL_s00004g609 I
BAUCODRAFT_138682 Baudoinia compniacensis BAUCODRAFT_138682 N
BAUCODRAFT_39053 Baudoinia compniacensis BAUCODRAFT_39053 I
BBA_06883 Beauveria bassiana BBA_06883 I
BDDG_06646 Blastomyces dermatitidis BDDG_06646 I
CADAFLAG00008989 Aspergillus flavus CADAFLAG00008989 I
CADANGAG00013867 Aspergillus niger CADANGAG00013867 I
nirA Aspergillus nidulans CADANIAG00002651 D
CFIO01_00183 Colletotrichum fioriniae CFIO01_00183 I
CH063_11489 Colletotrichum higginsianum CH063_11489 I
CHGG_04711 Chaetomium globosum CHGG_04711 I
CIMG_09213 Coccidioides immitis CIMG_09213 I
Cob_02846 Colletotrichum orbiculare Cob_02846 I
CPC735_016280 Coccidioides posadasii CPC735_016280 I
CSUB01_05654 Colletotrichum sublineola CSUB01_05654 I
CTHT_0032940 Chaetomium thermophilum CTHT_0032940 I
DOTSEDRAFT_74135 Dothistroma septosporum DOTSEDRAFT_74135 I
DOTSEDRAFT_75913 Dothistroma septosporum DOTSEDRAFT_75913 N
DRE_01909 Drechslerella stenobrocha DRE_01909 N
EPUS_07480 Endocarpon pusillum EPUS_07480 I
estExt_Genewise1.C_31155 Mycosphaerella fijiensis estExt_Genewise1.C_31155 I
estExt_Genewise1.C_31209 Neurospora discreta estExt_Genewise1.C_31209 I
estExt_Genewise1Plus.C_chr_90305 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_90305 I
EURHEDRAFT_481352 Aspergillus ruber EURHEDRAFT_481352 I
FFUJ_04567 Fusarium fujikuroi FFUJ_04567 I
fgenesh1_pg.C_chr_12000059 Mycosphaerella graminicola fgenesh1_pg.C_chr_12000059 N
FGRRES_16471_M Fusarium graminearum FGRRES_16471_M I
FOXG_06396 Fusarium oxysporum FOXG_06396 I
FPSE_07163 Fusarium pseudograminearum FPSE_07163 I
FVEG_04246 Fusarium verticillioides FVEG_04246 I
G647_08026 Cladophialophora carrionii G647_08026 I
GGTG_08450 Gaeumannomyces graminis GGTG_08450 I
GLRG_07227 Colletotrichum graminicola GLRG_07227 I
GMDG_07670 Pseudogymnoascus destructans GMDG_07670 I
GSTUM_00002283001 Tuber melanosporum GSTUM_00002283001 I
H072_2295 Dactylellina haptotyla H072_2295 I
H101_04520 Trichophyton interdigitale H101_04520 I
HMPREF1541_10049 Cyphellophora europaea HMPREF1541_10049 I
M437DRAFT_55860 Aureobasidium melanogenum M437DRAFT_55860 I
MAPG_05250 Magnaporthe poae MAPG_05250 I
MBM_00857 Marssonina brunnea MBM_00857 I
MCYG_05152 Microsporum canis MCYG_05152 I
MGG_01518 Magnaporthe oryzae MGG_01518 I
MGYG_06191 Microsporum gypseum MGYG_06191 I
MYCFIDRAFT_95405 Pseudocercospora fijiensis MYCFIDRAFT_95405 I
Mycgr3G75413 Zymoseptoria tritici Mycgr3G75413 I
Mycgr3G96927 Zymoseptoria tritici Mycgr3G96927 N
MYCTH_2298994 Myceliophthora thermophila MYCTH_2298994 I
nit-4 Neurospora crassa NCU08294 D
NEUTE1DRAFT_78894 Neurospora tetrasperma NEUTE1DRAFT_78894 I
OCS_03410 Ophiocordyceps sinensis OCS_03410 I
OIDMADRAFT_145878 Oidiodendron maius OIDMADRAFT_145878 I
PAAG_02447 Paracoccidioides sp lutzii PAAG_02447 I
PDE_07492 Penicillium oxalicum PDE_07492 I
PMAA_031240 Penicillium marneffei PMAA_031240 I
PMAA_031240 Talaromyces marneffei PMAA_031240 I
PODANS_6_3660 Podospora anserina PODANS_6_3660 I
PV04_09653 Capronia semiimmersa PV04_09653 I
PV05_00256 Exophiala xenobiotica PV05_00256 I
PV06_07400 Exophiala oligosperma PV06_07400 I
PV07_00058 Cladophialophora immunda PV07_00058 I
PV08_01595 Exophiala spinifera PV08_01595 I
PV09_06735 Verruconis gallopava PV09_06735 I
PV11_03250 Exophiala sideris PV11_03250 I
S40285_05835 Stachybotrys chlorohalonata S40285_05835 I
S40288_02558 Stachybotrys chartarum S40288_02558 I
SAPIO_CDS7494 Scedosporium apiospermum SAPIO_CDS7494 I
SEPMUDRAFT_151303 Sphaerulina musiva SEPMUDRAFT_151303 I
SEPMUDRAFT_152192 Sphaerulina musiva SEPMUDRAFT_152192 N
SMAC_00922 Sordaria macrospora SMAC_00922 I
TEQG_04623 Trichophyton equinum TEQG_04623 I
TESG_03837 Trichophyton tonsurans TESG_03837 I
THITE_2115412 Thielavia terrestris THITE_2115412 I
TSTA_066900 Talaromyces stipitatus TSTA_066900 I
UCRPA7_467 Togninia minima UCRPA7_467 I
V499_08062 Pseudogymnoascus pannorum V499_08062 I
VDAG_08005 Verticillium dahliae VDAG_08005 I
VDBG_01257 Verticillium alfalfae VDBG_01257 I
VDBG_01257 Verticillium albo atrum VDBG_01257 I
VHEMI00532 Torrubiella hemipterigena VHEMI00532 I
Z517_01923 Fonsecaea pedrosoi Z517_01923 I
Z518_03222 Rhinocladiella mackenziei Z518_03222 I
Z519_11440 Cladophialophora bantiana Z519_11440 I