Q40513_TOBAC (Nicotiana tabacum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Q40513_TOBAC T257112_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q40513_TOBAC
M11001_2.00		 Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.875 0.875
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.875 0.875
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.812 0.812
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.812 0.812
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.729 0.729
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.729 0.729
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.729 0.729
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.708 0.708
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.708 0.708
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.708 0.708
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.708 0.708
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.708 0.708
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q40513_TOBAC MADS box 10 57

Links

Other MADS box family TFs
Other Nicotiana tabacum TFs

398 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003158 Aedes aegypti AAEL003158 I 0.000
AALB003384 Anopheles albimanus AALB003384 I 0.000
AARA001486 Anopheles arabiensis AARA001486 I 0.000
AATE008808 Anopheles atroparvus AATE008808 I 0.000
ACOM028352 Anopheles coluzzii ACOM028352 I 0.000
ACUA003130 Anopheles culicifacies ACUA003130 I 0.000
ACYPI28321 Acyrthosiphon pisum ACYPI28321 I 0.000
ADAC003085 Anopheles darlingi ADAC003085 I 0.000
ADIR008273 Anopheles dirus ADIR008273 I 0.000
AEPI009779 Anopheles epiroticus AEPI009779 I 0.000
AFAF007403 Anopheles farauti AFAF007403 I 0.000
AFUN002303 Anopheles funestus AFUN002303 I 0.000
AGAP003406 Anopheles gambiae AGAP003406 I 0.000
AMEC009026 Anopheles melas AMEC009026 I 0.000
AMEM013111 Anopheles merus AMEM013111 I 0.000
AMIN003870 Anopheles minimus AMIN003870 I 0.000
AQUA010265 Anopheles quadriannulatus AQUA010265 I 0.000
ASIS007877 Anopheles sinensis ASIS007877 I 0.000
ASTEI03376 Anopheles stephensi ASTEI03376 I 0.000
A_06265 Schistosoma haematobium A_06265 I 0.000
BGIBMGA005045 Bombyx mori BGIBMGA005045 N 0.000
CapteG70959 Capitella teleta CapteG70959 I 0.000
Cflo_06253--XP_001122398.1_APIME Camponotus floridanus Cflo_06253--XP_001122398.1_APIME I 0.000
CPIJ003723 Culex quinquefasciatus CPIJ003723 I 0.000
CpipJ_CPIJ003723 Culex pipiens CpipJ_CPIJ003723 I 0.000
D915_03631 Fasciola hepatica D915_03631 I 0.000
ECANG7_00675 Echinococcus canadensis ECANG7_00675 N 0.000
EmuJ_000101200 Echinococcus multilocularis EmuJ_000101200 N 0.000
NKX2-3 Dasypus novemcinctus ENSDNOG00000040342 I 0.000
ENSDNOG00000042382 Dasypus novemcinctus ENSDNOG00000042382 I 0.000
ENSFALG00000015342 Ficedula albicollis ENSFALG00000015342 I 0.000
ENSONIG00000010351 Oreochromis niloticus ENSONIG00000010351 I 0.000
ENSPFOG00000022617 Poecilia formosa ENSPFOG00000022617 I 0.000
ENSTRUG00000006200 Takifugu rubripes ENSTRUG00000006200 I 0.000
fgenesh2_pg.scaffold_10000067 Branchiostoma floridae fgenesh2_pg.scaffold_10000067 I 0.000
fgenesh2_pg.scaffold_63000032 Branchiostoma floridae fgenesh2_pg.scaffold_63000032 I 0.000
HDID_0000204801 Hymenolepis diminuta HDID_0000204801 N 0.000
HMEL009910 Heliconius melpomene HMEL009910 N 0.000
HmN_000016500 Hymenolepis microstoma HmN_000016500 N 0.000
HNAJ_0001194801 Hymenolepis nana HNAJ_0001194801 N 0.000
KGM_09142 Danaus plexippus KGM_09142 N 0.000
LLOJ009601 Lutzomyia longipalpis LLOJ009601 I 0.000
LotgiG80572 Lottia gigantea LotgiG80572 I 0.000
MCINX015546 Melitaea cinxia MCINX015546 I 0.000
MESCA004778 Megaselia scalaris MESCA004778 I 0.000
NEMVEDRAFT_v1g80927 Nematostella vectensis NEMVEDRAFT_v1g80927 I 0.000
OESDEN_07489 Oesophagostomum dentatum OESDEN_07489 I 0.000
Sakowv30044194m.g Saccoglossus kowalevskii Sakowv30044194m.g I 0.000
SINV16571 Solenopsis invicta SINV16571 I 0.000
Smp_000075 Schistosoma mansoni Smp_000075 I 0.000
SPU_020565 Strongylocentrotus purpuratus SPU_020565 I 0.000
SSLN_0000254701 Schistocephalus solidus SSLN_0000254701 N 0.000
TASK_0000056701 Taenia asiatica TASK_0000056701 N 0.000
tetur05g02800 Tetranychus urticae tetur05g02800 I 0.000