cassava15247.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava15247.m1 T257177_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15247.m1 MADS box 10 54

Links

Other MADS box family TFs
Other Manihot esculenta TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
anac095 Arabidopsis lyrata Al_scaffold_0007_3541 N 0.000
AT3G56520 Arabidopsis thaliana AT3G56520 N 0.000
Bo6g064960 Brassica oleracea Bo6g064960 N 0.000
Bo6g072200 Brassica oleracea Bo6g072200 N 0.000
Bo8g090950 Brassica oleracea Bo8g090950 N 0.000
Bostr.20505s0102 Boechera stricta Bostr.20505s0102 N 0.000
Bostr.7200s0128 Boechera stricta Bostr.7200s0128 N 0.000
Bra003244 Brassica rapa Bra003244 N 0.000
Bra007254 Brassica rapa Bra007254 N 0.000
Bra028486 Brassica rapa Bra028486 N 0.000
Cagra.1914s0015 Capsella grandiflora Cagra.1914s0015 N 0.000
Carubv10005574m.g Capsella rubella Carubv10005574m.g N 0.000
Ca_22941 Cicer arietinum Ca_22941 N 0.000
fgenesh1_pm.C_scaffold_5001708 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001708 N 0.000
GRMZM2G179049 Zea mays GRMZM2G179049 N 0.000
LPERR08G18520 Leersia perrieri LPERR08G18520 N 0.000
mgf006124m Mimulus guttatus mgf006124m N 0.000
MLOC_55957 Hordeum vulgare MLOC_55957 N 0.000
OMERI06G13840 Oryza meridionalis OMERI06G13840 N 0.000
scaffold_500654.1 Arabidopsis lyrata scaffold_500654.1 N 0.000
Thhalv10006451m.g Eutrema salsugineum Thhalv10006451m.g N 0.000
Thhalv10027901m.g Eutrema salsugineum Thhalv10027901m.g N 0.000