CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava15247.m1
(
Manihot esculenta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
cassava15247.m1
T257177_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.756
0.756
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava15247.m1
MADS box
10
54
YISNDSARKGTFKKRKKGLLKKVSELSTLCGVDACAIIYSSYDPQ
Links
Other
MADS box
family TFs
Other
Manihot esculenta
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
anac095
Arabidopsis lyrata
Al_scaffold_0007_3541
N
0.000
AT3G56520
Arabidopsis thaliana
AT3G56520
N
0.000
Bo6g064960
Brassica oleracea
Bo6g064960
N
0.000
Bo6g072200
Brassica oleracea
Bo6g072200
N
0.000
Bo8g090950
Brassica oleracea
Bo8g090950
N
0.000
Bostr.20505s0102
Boechera stricta
Bostr.20505s0102
N
0.000
Bostr.7200s0128
Boechera stricta
Bostr.7200s0128
N
0.000
Bra003244
Brassica rapa
Bra003244
N
0.000
Bra007254
Brassica rapa
Bra007254
N
0.000
Bra028486
Brassica rapa
Bra028486
N
0.000
Cagra.1914s0015
Capsella grandiflora
Cagra.1914s0015
N
0.000
Carubv10005574m.g
Capsella rubella
Carubv10005574m.g
N
0.000
Ca_22941
Cicer arietinum
Ca_22941
N
0.000
fgenesh1_pm.C_scaffold_5001708
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001708
N
0.000
GRMZM2G179049
Zea mays
GRMZM2G179049
N
0.000
LPERR08G18520
Leersia perrieri
LPERR08G18520
N
0.000
mgf006124m
Mimulus guttatus
mgf006124m
N
0.000
MLOC_55957
Hordeum vulgare
MLOC_55957
N
0.000
OMERI06G13840
Oryza meridionalis
OMERI06G13840
N
0.000
scaffold_500654.1
Arabidopsis lyrata
scaffold_500654.1
N
0.000
Thhalv10006451m.g
Eutrema salsugineum
Thhalv10006451m.g
N
0.000
Thhalv10027901m.g
Eutrema salsugineum
Thhalv10027901m.g
N
0.000