Sakowv30019106m.g (Saccoglossus kowalevskii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Sakowv30019106m.g T257482_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.979 0.979
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.979 0.979
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.979 0.979
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.979 0.979
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.979 0.979
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.979 0.979
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.979 0.979
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.979 0.979
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.979 0.979
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.979 0.979
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.979 0.979
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.979 0.979
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.979 0.979
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.979 0.979
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.979 0.979
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.979 0.979
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.979 0.979
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.979 0.979
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.979 0.979
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.979 0.979
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.979 0.979
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.979 0.979
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.979 0.979
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.979 0.979
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.917 0.917
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.875 0.875
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.792 0.792
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.792 0.792
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.792 0.792
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.792 0.792
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.792 0.792
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23926230_peptide MADS box 110 157
23926231_peptide MADS box 110 157
23926232_peptide MADS box 110 157
23926233_peptide MADS box 110 157

Links

Other MADS box family TFs
Other Saccoglossus kowalevskii TFs

548 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000939001 Angiostrongylus cantonensis ACAC_0000939001 I 0.938
ACEP12187 Atta cephalotes ACEP12187 I 0.979
ACOC_0000094701 Angiostrongylus costaricensis ACOC_0000094701 I 0.938
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.958
ANCCAN_16750 Ancylostoma caninum ANCCAN_16750 I 0.938
ANCCEY_11374 Ancylostoma ceylanicum ANCCEY_11374 I 0.938
ANCCEY_13649 Ancylostoma ceylanicum ANCCEY_13649 I 0.938
Aqu1.224560 Amphimedon queenslandica Aqu1.224560 I 0.938
ASIM_0002132201 Anisakis simplex ASIM_0002132201 I 0.958
ASU_11865 Ascaris suum ASU_11865 I 0.958
ASU_14961 Ascaris suum ASU_14961 I 0.958
BATDEDRAFT_7506 Batrachochytrium dendrobatidis BATDEDRAFT_7506 I 0.833
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.979
Bm3022 Brugia malayi Bm3022 I 0.958
Bm7708 Brugia malayi Bm7708 I 0.958
BTMF_0000835601 Brugia timori BTMF_0000835601 I 0.958
CapteG221100 Capitella teleta CapteG221100 I 0.979
CBG12542 Caenorhabditis briggsae CBG12542 I 0.917
CBN00046 Caenorhabditis brenneri CBN00046 I 0.917
CBN02826 Caenorhabditis brenneri CBN02826 I 0.917
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.979
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.979
CJA08385 Caenorhabditis japonica CJA08385 I 0.917
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
CRE29464 Caenorhabditis remanei CRE29464 I 0.917
D917_02561 Trichinella nativa D917_02561 I 1.000
D918_07967 Trichuris suis D918_07967 I 1.000
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 1.000
srfB Dictyostelium discoideum DDB_G0282835 I 0.833
DICVIV_07203 Dictyocaulus viviparus DICVIV_07203 I 0.938
DME_0000010001 Dracunculus medinensis DME_0000010001 I 0.958
EEL_0000867301 Elaeophora elaphi EEL_0000867301 I 0.958
EFA77376.1 Polysphondylium pallidum EFA77376.1 I 0.787
EFV60876 Trichinella spiralis EFV60876 I 1.000
SRF Anolis carolinensis ENSACAG00000004798 I 0.979
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.979
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.979
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.979
SRF Bos taurus ENSBTAG00000012777 I 0.979
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.979
SRF Canis familiaris ENSCAFG00000001829 I 0.979
srf Ciona intestinalis ENSCING00000018042 I 0.917
SRF Callithrix jacchus ENSCJAG00000005223 I 0.979
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.979
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.938
srfa Danio rerio ENSDARG00000053918 I 0.979
srfb Danio rerio ENSDARG00000102867 I 0.979
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.979
SRF Equus caballus ENSECAG00000009068 I 0.979
SRF Felis catus ENSFCAG00000025180 I 0.979
SRF Homo sapiens ENSG00000112658 D 0.979
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.979
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.979
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.979
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.979
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.979
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.979
SRF Macaca mulatta ENSMMUG00000000033 I 0.979
SRF Monodelphis domestica ENSMODG00000018981 I 0.979
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.979
Srf Mus musculus ENSMUSG00000015605 D 0.979
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.979
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.979
SRF Otolemur garnettii ENSOGAG00000029623 I 0.979
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.979
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.979
SRF Oryzias latipes ENSORLG00000013036 I 0.979
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.979
SRF Procavia capensis ENSPCAG00000009376 I 0.917
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.979
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.979
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.979
SRF Pan troglodytes ENSPTRG00000018189 I 0.979
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.979
Srf Rattus norvegicus ENSRNOG00000018232 I 0.979
SRF Sus scrofa ENSSSCG00000001661 I 0.979
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.979
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.979
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.979
srfa Takifugu rubripes ENSTRUG00000011448 I 0.979
SRF Takifugu rubripes ENSTRUG00000017531 I 0.979
SRF Tursiops truncatus ENSTTRG00000007017 I 0.979
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.979
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.792
EVEC_0001294401 Enterobius vermicularis EVEC_0001294401 N
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.792
e_gw1.2.1101.1 Mucor circinelloides e_gw1.2.1101.1 I 0.771
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.792
e_gw1.6.1281.1 Mucor circinelloides e_gw1.6.1281.1 I 0.792
bs Drosophila melanogaster FBgn0004101 D 0.979
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.979
GF11392 Drosophila ananassae FBgn0088432 I 0.979
GG22961 Drosophila erecta FBgn0115118 I 0.979
GH20989 Drosophila grimshawi FBgn0128451 I 0.979
GI21322 Drosophila mojavensis FBgn0144052 I 0.979
GL20046 Drosophila persimilis FBgn0157643 I 0.979
GM11854 Drosophila sechellia FBgn0166795 I 0.979
GD11852 Drosophila simulans FBgn0183591 I 0.979
GJ21595 Drosophila virilis FBgn0208714 I 0.979
GK22205 Drosophila willistoni FBgn0224190 I 0.979
GE14398 Drosophila yakuba FBgn0232006 I 0.979
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 1.000
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 1.000
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.792
GB47234 Apis mellifera GB47234 I 0.979
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I 0.812
GPUH_0001673101 Gongylonema pulchrum GPUH_0001673101 I 0.958
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.792
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.792
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.792
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.792
HCOI01934200 Haemonchus contortus HCOI01934200 I 0.938
HelroG137972 Helobdella robusta HelroG137972 I 0.875
HPBE_0000920601 Heligmosomoides bakeri HPBE_0000920601 I 0.938
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.979
ISCW019966 Ixodes scapularis ISCW019966 I 1.000
KAFR_0B05280 Kazachstania africana KAFR_0B05280 I 0.771
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.833
L798_08800 Zootermopsis nevadensis L798_08800 I 0.979
L889_g24087 Steinernema feltiae L889_g24087 I 0.833
L892_g14520 Steinernema scapterisci L892_g14520 I 0.833
L893_g14743 Steinernema glaseri L893_g14743 I 0.833
L898_g9834 Steinernema monticolum L898_g9834 I 0.833
LOAG_01601 Loa loa LOAG_01601 I 0.958
LotgiG59850 Lottia gigantea LotgiG59850 I 0.979
MDOA002443 Musca domestica MDOA002443 I 0.979
ML154140a Mnemiopsis leidyi ML154140a I 0.979
nAv.1.0.1.g08666 Acanthocheilonema viteae nAv.1.0.1.g08666 I 0.958
NBR_0001475101 Nippostrongylus brasiliensis NBR_0001475101 I 0.938
nDi.2.2.2.g03920 Dirofilaria immitis nDi.2.2.2.g03920 I 0.958
NECAME_15797 Necator americanus NECAME_15797 I 0.938
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.979
nLs.2.1.2.g09548 Litomosoides sigmodontis nLs.2.1.2.g09548 I 0.958
nOo.2.0.1.g11137 Onchocerca ochengi nOo.2.0.1.g11137 I 0.958
NV18787 Nasonia vitripennis NV18787 I 0.979
Ocbimv22020285m.g Octopus bimaculoides Ocbimv22020285m.g I 0.979
OESDEN_12192 Oesophagostomum dentatum OESDEN_12192 I 0.938
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.958
PTRK_0001139200 Parastrongyloides trichosuri PTRK_0001139200 I 0.958
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.979
RO3G_00948 Rhizopus oryzae RO3G_00948 I 0.812
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.792
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.792
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.792
RPRC001752 Rhodnius prolixus RPRC001752 I 0.815
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.938
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 1.000
scaffold2825-EXSNAP2012.1 Pristionchus exspectatus scaffold2825-EXSNAP2012.1 I 0.911
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.958
SMAR003014 Strigamia maritima SMAR003014 I 1.000
SPAL_0000748100 Strongyloides papillosus SPAL_0000748100 I 0.958
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.854
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.979
SSTP_0000932200 Strongyloides stercoralis SSTP_0000932200 I 0.958
SVE_1017000 Strongyloides venezuelensis SVE_1017000 I 0.958
TC004911 Tribolium castaneum TC004911 I 0.958
TCLT_0000849901 Thelazia callipaeda TCLT_0000849901 I 0.958
tetur02g05030 Tetranychus urticae tetur02g05030 I 0.917
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 1.000
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 1.000
unc-120 Caenorhabditis elegans WBGene00006844 D 0.917
WBGene00243571 Onchocerca volvulus WBGene00243571 I 0.958
WUBG_06152 Wuchereria bancrofti WUBG_06152 I 0.958
srf Xenopus tropicalis XB-GENE-482036 I 0.979
srf.L Xenopus laevis XB-GENE-864819 I 0.979
XP_002156545.1 Hydra magnipapillata XP_002156545.1 I 0.979
XP_002164692.1 Hydra magnipapillata XP_002164692.1 I 0.979