Carubv10014232m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10014232m.g T257772_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014232m MADS box 10 58

Links

Other MADS box family TFs
Other Capsella rubella TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.4.1489.1 Mycosphaerella graminicola e_gw1.4.1489.1 N 0.000
FGRRES_01428 Fusarium graminearum FGRRES_01428 N 0.000
FOXG_15853 Fusarium oxysporum FOXG_15853 N 0.000
FPSE_08525 Fusarium pseudograminearum FPSE_08525 N 0.000
GMDG_03103 Pseudogymnoascus destructans GMDG_03103 N 0.000
LEMA_P091720.1 Leptosphaeria maculans LEMA_P091720.1 N 0.000
M437DRAFT_36351 Aureobasidium melanogenum M437DRAFT_36351 N 0.000
MPH_04521 Macrophomina phaseolina MPH_04521 N 0.000
MYCFIDRAFT_135925 Pseudocercospora fijiensis MYCFIDRAFT_135925 N 0.000
Mycgr3G41050 Zymoseptoria tritici Mycgr3G41050 N 0.000
PAAG_00562 Paracoccidioides sp lutzii PAAG_00562 N 0.000
PABG_03554 Paracoccidioides brasiliensis PABG_03554 N 0.000
PV05_11590 Exophiala xenobiotica PV05_11590 N 0.000
PV09_06423 Verruconis gallopava PV09_06423 N 0.000
SEPMUDRAFT_148190 Sphaerulina musiva SEPMUDRAFT_148190 N 0.000
UCRNP2_8766 Neofusicoccum parvum UCRNP2_8766 N 0.000
V499_01463 Pseudogymnoascus pannorum V499_01463 N 0.000
Z518_04390 Rhinocladiella mackenziei Z518_04390 N 0.000