Carubv10015354m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10015354m.g T257776_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015354m MADS box 16 62

Links

Other MADS box family TFs
Other Capsella rubella TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ILR3 Arabidopsis thaliana AT5G54680 D
Bostr.26833s0797 Boechera stricta Bostr.26833s0797 I
Bra002964 Brassica rapa Bra002964 I
Bra022738 Brassica rapa Bra022738 I
Cagra.1629s0040 Capsella grandiflora Cagra.1629s0040 I
Carubv10026758m.g Capsella rubella Carubv10026758m.g I
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I
GLYMA12G34300 Glycine max GLYMA12G34300 I
GSMUA_Achr11G14790_001 Musa acuminata GSMUA_Achr11G14790_001 I
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I