CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10021540m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10021540m.g
T257799_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10021540m
MADS box
10
54
LITDNTTRRVTFQKRKAGLLKKINELTILCGLPACAIIYNEYKDG
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cmyd_10011617
Chelonia mydas
Cmyd_10011617
N
MXI1
Callithrix jacchus
ENSCJAG00000018614
I
MXI1
Homo sapiens
ENSG00000119950
D
ENSMLUG00000016004
Myotis lucifugus
ENSMLUG00000016004
I
MXI1
Macaca mulatta
ENSMMUG00000014350
I
ENSOANG00000003095
Ornithorhynchus anatinus
ENSOANG00000003095
N
ENSSHAG00000015280
Sarcophilus harrisii
ENSSHAG00000015280
N
MXI1
Sus scrofa
ENSSSCG00000022128
N
GB47086
Apis mellifera
GB47086
N
HHAL004586-PA
Halyomorpha halys
HHAL004586-PA
N
Hsal_06326--XP_001122605.1_APIME
Harpegnathos saltator
Hsal_06326--XP_001122605.1_APIME
N
PHUM333690
Pediculus humanus
PHUM333690
N
SINV22225
Solenopsis invicta
SINV22225
N
SMAR005404
Strigamia maritima
SMAR005404
N