Carubv10021738m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10021738m.g T257803_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021738m MADS box 12 60

Links

Other MADS box family TFs
Other Capsella rubella TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_209306 Agaricus bisporus AGABI2DRAFT_209306 I
AMAG_13564 Allomyces macrogynus AMAG_13564 N
BOTBODRAFT_69322 Botryobasidium botryosum BOTBODRAFT_69322 I
CC1G_09476 Coprinopsis cinerea CC1G_09476 I
CY34DRAFT_60788 Suillus luteus CY34DRAFT_60788 I
DACRYDRAFT_22521 Dacryopinax sp DACRYDRAFT_22521 I
DICSQDRAFT_88737 Dichomitus squalens DICSQDRAFT_88737 I
FIBRA_01395 Fibroporia radiculosa FIBRA_01395 I
FOMPIDRAFT_1116881 Fomitopsis pinicola FOMPIDRAFT_1116881 I
GALMADRAFT_259271 Galerina marginata GALMADRAFT_259271 I
GLOTRDRAFT_118212 Gloeophyllum trabeum GLOTRDRAFT_118212 I
gwh2.4.337.1 Phanerochaete chrysosporium gwh2.4.337.1 I
HETIRDRAFT_238331 Heterobasidion irregulare HETIRDRAFT_238331 I
HYDPIDRAFT_89380 Hydnomerulius pinastri HYDPIDRAFT_89380 I
JAAARDRAFT_59018 Jaapia argillacea JAAARDRAFT_59018 I
K443DRAFT_308353 Laccaria amethystina K443DRAFT_308353 I
K443DRAFT_681331 Laccaria amethystina K443DRAFT_681331 I
KLTH0D10428g Lachancea thermotolerans KLTH0D10428g N
KLTH0D10428g Kluyveromyces thermotolerans KLTH0D10428g N
LACBIDRAFT_167431 Laccaria bicolor LACBIDRAFT_167431 I
LACBIDRAFT_254568 Laccaria bicolor LACBIDRAFT_254568 I
LACBIDRAFT_254611 Laccaria bicolor LACBIDRAFT_254611 I
M378DRAFT_74968 Amanita muscaria M378DRAFT_74968 I
M404DRAFT_1005497 Pisolithus tinctorius M404DRAFT_1005497 I
M407DRAFT_11510 Tulasnella calospora M407DRAFT_11510 I
M408DRAFT_332528 Serendipita vermifera M408DRAFT_332528 I
M413DRAFT_449306 Hebeloma cylindrosporum M413DRAFT_449306 I
M422DRAFT_215363 Sphaerobolus stellatus M422DRAFT_215363 N
M422DRAFT_232009 Sphaerobolus stellatus M422DRAFT_232009 N
Moror_16036 Moniliophthora roreri Moror_16036 I
aod-2 Neurospora crassa NCU03352 D
PAN0_103d6719 Pseudozyma antarctica PAN0_103d6719 N
PAXINDRAFT_140170 Paxillus involutus PAXINDRAFT_140170 I
PAXRUDRAFT_36013 Paxillus rubicundulus PAXRUDRAFT_36013 I
PHLGIDRAFT_100651 Phlebiopsis gigantea PHLGIDRAFT_100651 I
PHSY_000426 Pseudozyma hubeiensis PHSY_000426 N
PILCRDRAFT_528412 Piloderma croceum PILCRDRAFT_528412 I
PISMIDRAFT_102262 Pisolithus microcarpus PISMIDRAFT_102262 I
PLEOSDRAFT_1032088 Pleurotus ostreatus PLEOSDRAFT_1032088 I
PODANS_3_6340 Podospora anserina PODANS_3_6340 I
POSPLDRAFT_96343 Postia placenta POSPLDRAFT_96343 I
PSEUBRA_SCAF9g01287 Pseudozyma brasiliensis PSEUBRA_SCAF9g01287 N
RO3G_02623 Rhizopus oryzae RO3G_02623 N
SCHCODRAFT_110010 Schizophyllum commune SCHCODRAFT_110010 D
SCLCIDRAFT_97185 Scleroderma citrinum SCLCIDRAFT_97185 I
SERLA73DRAFT_126671 Serpula lacrymans SERLA73DRAFT_126671 I
SPPG_00605 Spizellomyces punctatus SPPG_00605 N
sr14830 Sporisorium reilianum sr14830 N
THITE_2156602 Thielavia terrestris THITE_2156602 I
UHOR_05949 Ustilago hordei UHOR_05949 N
UM03925 Ustilago maydis UM03925 N
V565_176590 Rhizoctonia solani V565_176590 I
WALSEDRAFT_60818 Wallemia sebi WALSEDRAFT_60818 I