Carubv10022431m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10022431m.g T257815_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022431m MADS box 16 63

Links

Other MADS box family TFs
Other Capsella rubella TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004542 Ricinus communis 30076.m004542 I
30174.m008814 Ricinus communis 30174.m008814 I
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I
MYC2 Arabidopsis thaliana AT1G32640 D
UNE10 Arabidopsis thaliana AT4G00050 D
MYC4 Arabidopsis thaliana AT4G17880 D
MYC3 Arabidopsis thaliana AT5G46760 D
Bo01130s010 Brassica oleracea Bo01130s010 I
Bo1g017990 Brassica oleracea Bo1g017990 I
Bo3g042120 Brassica oleracea Bo3g042120 I
Bo3g054850 Brassica oleracea Bo3g054850 I
Bo5g086990 Brassica oleracea Bo5g086990 I
Bo7g075710 Brassica oleracea Bo7g075710 I
Bo8g028850 Brassica oleracea Bo8g028850 I
Bo9g065530 Brassica oleracea Bo9g065530 I
Bo9g066680 Brassica oleracea Bo9g066680 I
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I
Bostr.28243s0060 Boechera stricta Bostr.28243s0060 I
Bostr.30275s0255 Boechera stricta Bostr.30275s0255 I
Bostr.3359s0090 Boechera stricta Bostr.3359s0090 I
Bra000560 Brassica rapa Bra000560 I
Bra010178 Brassica rapa Bra010178 I
Bra013263 Brassica rapa Bra013263 I
Bra017520 Brassica rapa Bra017520 I
Bra017523 Brassica rapa Bra017523 I
Bra017527 Brassica rapa Bra017527 I
Bra024998 Brassica rapa Bra024998 I
Bra037312 Brassica rapa Bra037312 I
Cagra.0751s0023 Capsella grandiflora Cagra.0751s0023 I
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I
Cagra.3356s0080 Capsella grandiflora Cagra.3356s0080 I
Cagra.7865s0024 Capsella grandiflora Cagra.7865s0024 I
Carubv10001567m.g Capsella rubella Carubv10001567m.g I
Carubv10004392m.g Capsella rubella Carubv10004392m.g I
Carubv10008586m.g Capsella rubella Carubv10008586m.g I
Carubv10028441m.g Capsella rubella Carubv10028441m.g I
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I
Ca_01053 Cicer arietinum Ca_01053 I
Ca_09378 Cicer arietinum Ca_09378 I
Ca_11514 Cicer arietinum Ca_11514 I
Ca_12352 Cicer arietinum Ca_12352 I
Ca_22883 Cicer arietinum Ca_22883 I
chr1.CM0122.50.nc Lotus japonicus chr1.CM0122.50.nc I
chr2.CM0177.830.nc Lotus japonicus chr2.CM0177.830.nc I
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I
estExt_fgenesh1_pg.C_50104 Physcomitrella patens estExt_fgenesh1_pg.C_50104 I
estExt_fgenesh1_pg.C_740025 Physcomitrella patens estExt_fgenesh1_pg.C_740025 I
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I
Eucgr.H02386 Eucalyptus grandis Eucgr.H02386 I
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I
evm.TU.supercontig_65.63 Carica papaya evm.TU.supercontig_65.63 N
fgenesh2_kg.7__2520__AT4G17880.1 Arabidopsis lyrata fgenesh2_kg.7__2520__AT4G17880.1 I
gene10501-v1.0-hybrid Fragaria vesca gene10501-v1.0-hybrid I
gene13705-v1.0-hybrid Fragaria vesca gene13705-v1.0-hybrid I
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I
GLYMA01G02251 Glycine max GLYMA01G02251 I
GLYMA01G12740 Glycine max GLYMA01G12740 I
GLYMA01G32890 Glycine max GLYMA01G32890 I
GLYMA02G00981 Glycine max GLYMA02G00981 N
GLYMA03G04000 Glycine max GLYMA03G04000 I
GLYMA03G38391 Glycine max GLYMA03G38391 I
GLYMA08G36720 Glycine max GLYMA08G36720 I
GLYMA09G33730 Glycine max GLYMA09G33730 I
GLYMA10G27910 Glycine max GLYMA10G27910 I
GLYMA11G17120 Glycine max GLYMA11G17120 I
GLYMA19G40980 Glycine max GLYMA19G40980 I
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I
Gorai.003G182100 Gossypium raimondii Gorai.003G182100 I
Gorai.004G184800 Gossypium raimondii Gorai.004G184800 I
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I
Lus10009261.g Linum usitatissimum Lus10009261.g I
Lus10038020.g Linum usitatissimum Lus10038020.g I
MDP0000029168 Malus domestica MDP0000029168 I
MDP0000136498 Malus domestica MDP0000136498 I
MDP0000439540 Malus domestica MDP0000439540 I
mgf002775m Mimulus guttatus mgf002775m I
MLOC_65463 Hordeum vulgare MLOC_65463 I
MTR_4g097950 Medicago truncatula MTR_4g097950 I
MTR_5g030430 Medicago truncatula MTR_5g030430 I
MTR_7g110810 Medicago truncatula MTR_7g110810 I
MTR_8g067280 Medicago truncatula MTR_8g067280 I
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I
Pavir.Ca00449 Panicum virgatum Pavir.Ca00449 I
Pavir.Cb01851 Panicum virgatum Pavir.Cb01851 I
PGSC0003DMG400001161 Solanum tuberosum PGSC0003DMG400001161 I
PGSC0003DMG400017535 Solanum tuberosum PGSC0003DMG400017535 I
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I
PK18474.1 Cannabis sativa PK18474.1 D
PK20816.1 Cannabis sativa PK20816.1 I
PK25041.1 Cannabis sativa PK25041.1 I
Pm023237 Prunus mume Pm023237 I
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I
POPTR_0003s09090 Populus trichocarpa POPTR_0003s09090 I
PRUPE_ppa002404mg Prunus persica PRUPE_ppa002404mg I
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I
SapurV1A.0151s0080 Salix purpurea SapurV1A.0151s0080 I
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I
Sb09g008120 Sorghum bicolor Sb09g008120 I
ATMYC2 Arabidopsis lyrata scaffold_103634.1 I
UNE10 Arabidopsis lyrata scaffold_604304.1 I
scaffold_800152.1 Arabidopsis lyrata scaffold_800152.1 I
Si021549m.g Setaria italica Si021549m.g I
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I
Solyc08g076930.1 Solanum lycopersicum Solyc08g076930.1 I
TCM_005607 Theobroma cacao TCM_005607 I
Thhalv10000808m.g Eutrema salsugineum Thhalv10000808m.g I
Thhalv10000853m.g Eutrema salsugineum Thhalv10000853m.g I
Thhalv10007075m.g Eutrema salsugineum Thhalv10007075m.g I
Thhalv10024688m.g Eutrema salsugineum Thhalv10024688m.g I
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I
UNE10 Vitis vinifera VIT_15s0021g02690 I