evm.TU.contig_26058.1 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_26058.1 T258040_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_26058.1 MADS box 10 55

Links

Other MADS box family TFs
Other Carica papaya TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.sca_12_chr5_2_0000331 Nectria haematococca fgenesh1_pg.sca_12_chr5_2_0000331 N 0.000
GGTG_09020 Gaeumannomyces graminis GGTG_09020 N 0.000
NechaG80151 Fusarium solani NechaG80151 N 0.000
Pc13g06530 Penicillium chrysogenum Pc13g06530 N 0.000
PCH_Pc13g06530 Penicillium rubens PCH_Pc13g06530 N 0.000
PEX1_099950 Penicillium expansum PEX1_099950 N 0.000
PITC_065540 Penicillium italicum PITC_065540 N 0.000
SS1G_02054 Sclerotinia sclerotiorum SS1G_02054 N 0.000
TRIVIDRAFT_189391 Trichoderma virens TRIVIDRAFT_189391 N 0.000
U727_00430311331 Penicillium solitum U727_00430311331 N 0.000
V499_04467 Pseudogymnoascus pannorum V499_04467 N 0.000
V499_06431 Pseudogymnoascus pannorum V499_06431 N 0.000